Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18054 | 3' | -53.4 | NC_004680.1 | + | 430 | 0.7 | 0.607503 |
Target: 5'- cGCACGCGCCU-UCGCGuuauCGGCAgUCCa -3' miRNA: 3'- uUGUGUGCGGAgGGUGCu---GUUGU-AGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 2203 | 1.09 | 0.001674 |
Target: 5'- cAACACACGCCUCCCACGACAACAUCCc -3' miRNA: 3'- -UUGUGUGCGGAGGGUGCUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 2383 | 0.66 | 0.810237 |
Target: 5'- --aACGCGCCaacaaacgcaCCCGCGACAu--UCCg -3' miRNA: 3'- uugUGUGCGGa---------GGGUGCUGUuguAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 7045 | 0.67 | 0.790781 |
Target: 5'- -gUACGCGCCUgCCCAgaaGACAGCuaaacaGUUCg -3' miRNA: 3'- uuGUGUGCGGA-GGGUg--CUGUUG------UAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 9304 | 0.66 | 0.810237 |
Target: 5'- cAGCACGCGCCa-CCGCGccauugaccggcGCGAaAUCCa -3' miRNA: 3'- -UUGUGUGCGGagGGUGC------------UGUUgUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 10363 | 0.66 | 0.837962 |
Target: 5'- cAGCuccuuCGCCagCCACGACAACGggaugCCc -3' miRNA: 3'- -UUGugu--GCGGagGGUGCUGUUGUa----GG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 10612 | 0.67 | 0.790781 |
Target: 5'- --aACGCGCCguaagCUGCGAgaCAGCAUCCu -3' miRNA: 3'- uugUGUGCGGag---GGUGCU--GUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 10801 | 0.69 | 0.626411 |
Target: 5'- cAACGCccuugauCGCCUUCCACGcggcgaacgcgcccACAACAUCg -3' miRNA: 3'- -UUGUGu------GCGGAGGGUGC--------------UGUUGUAGg -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 11050 | 0.67 | 0.780794 |
Target: 5'- ----gAUGUCUCCCGCcgucGAUGGCAUCCu -3' miRNA: 3'- uugugUGCGGAGGGUG----CUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 11336 | 0.71 | 0.509462 |
Target: 5'- --gGCAUGCCaggaaUCCCcgGCGGCAACGUCg -3' miRNA: 3'- uugUGUGCGG-----AGGG--UGCUGUUGUAGg -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 11409 | 0.67 | 0.770649 |
Target: 5'- --gGCACGCUUCuCCGCcaguuuguGGCGgGCAUCCa -3' miRNA: 3'- uugUGUGCGGAG-GGUG--------CUGU-UGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 12201 | 0.69 | 0.674187 |
Target: 5'- --aGC-CGCCccgUCCGCGGCAGCGUUCc -3' miRNA: 3'- uugUGuGCGGa--GGGUGCUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 15522 | 0.67 | 0.780794 |
Target: 5'- gGACAgACaGCCcaUCCCGCGACAgggcuugcagcACGgugCCg -3' miRNA: 3'- -UUGUgUG-CGG--AGGGUGCUGU-----------UGUa--GG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 18428 | 0.67 | 0.780794 |
Target: 5'- uGACACGguggugucCGCUaUCCGCGGCGGCGUgCa -3' miRNA: 3'- -UUGUGU--------GCGGaGGGUGCUGUUGUAgG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 18768 | 0.66 | 0.828014 |
Target: 5'- -uCugAUGCCaaggaugUCCCACGAgAACAaCCc -3' miRNA: 3'- uuGugUGCGG-------AGGGUGCUgUUGUaGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 28575 | 0.67 | 0.780794 |
Target: 5'- -uCACgGCGgCUCCCcaAUGGCAcCAUCCa -3' miRNA: 3'- uuGUG-UGCgGAGGG--UGCUGUuGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 28867 | 0.67 | 0.739384 |
Target: 5'- aAACGCACcgGCC-CgCACGuggacuACAACGUCCa -3' miRNA: 3'- -UUGUGUG--CGGaGgGUGC------UGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 30031 | 0.7 | 0.563341 |
Target: 5'- gGACGCaaACGgUUCCUGCGGCG-CGUCCa -3' miRNA: 3'- -UUGUG--UGCgGAGGGUGCUGUuGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 32488 | 0.66 | 0.837962 |
Target: 5'- --uGCGCGCC-CgCAgCGACGACggCCg -3' miRNA: 3'- uugUGUGCGGaGgGU-GCUGUUGuaGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 33657 | 0.68 | 0.717968 |
Target: 5'- cAGCGCAgGCCgaggaguucCCCACGGCgGGCGcCCg -3' miRNA: 3'- -UUGUGUgCGGa--------GGGUGCUG-UUGUaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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