miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18054 5' -50.4 NC_004680.1 + 16264 0.66 0.942343
Target:  5'- uUCGAugUUGUaCGGCgccgaGGCUGUCg -3'
miRNA:   3'- -AGUUugAACA-GCCGguuugCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 52698 0.66 0.937092
Target:  5'- aUUAAGCU-----GCCAAauGCGGCCGUCg -3'
miRNA:   3'- -AGUUUGAacagcCGGUU--UGCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 14929 0.66 0.93655
Target:  5'- cCGGACUgGagGGCCGAuugccauGCGGCUGUUu -3'
miRNA:   3'- aGUUUGAaCagCCGGUU-------UGCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 36564 0.66 0.931545
Target:  5'- -aGAAgaUGUUGGCU--GCGGCgAUCg -3'
miRNA:   3'- agUUUgaACAGCCGGuuUGCCGgUAG- -5'
18054 5' -50.4 NC_004680.1 + 18957 0.66 0.9304
Target:  5'- cCGAACUUGUUGGgCuuuuggguggcACGGCCGc- -3'
miRNA:   3'- aGUUUGAACAGCCgGuu---------UGCCGGUag -5'
18054 5' -50.4 NC_004680.1 + 3154 0.66 0.928074
Target:  5'- cCGAugUUGUCGGCgAucaaggagcauauucGACaGCUGUCg -3'
miRNA:   3'- aGUUugAACAGCCGgU---------------UUGcCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 3306 0.66 0.925701
Target:  5'- gUCGAuaGCgaagaUCGGCCuggaGGCCAUCu -3'
miRNA:   3'- -AGUU--UGaac--AGCCGGuuugCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 27699 0.66 0.925701
Target:  5'- cUUGAACacGUCGGUCAcccAGCGGUgAUCc -3'
miRNA:   3'- -AGUUUGaaCAGCCGGU---UUGCCGgUAG- -5'
18054 5' -50.4 NC_004680.1 + 22764 0.66 0.920187
Target:  5'- gCGAGUUUGUCGGCguccgccccgggagaAGGCGGCCgaGUCg -3'
miRNA:   3'- aGUUUGAACAGCCGg--------------UUUGCCGG--UAG- -5'
18054 5' -50.4 NC_004680.1 + 41189 0.66 0.91956
Target:  5'- gUCGAAUgggGcUUGGCCGGAuuccUGGUCAUCa -3'
miRNA:   3'- -AGUUUGaa-C-AGCCGGUUU----GCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 23889 0.66 0.91956
Target:  5'- uUCAgacgcAGCUUGaCGGUaAGGCGGCCgcGUCg -3'
miRNA:   3'- -AGU-----UUGAACaGCCGgUUUGCCGG--UAG- -5'
18054 5' -50.4 NC_004680.1 + 27817 0.67 0.899365
Target:  5'- aCGcGCUggaugGUUGGCCGcagcucGGCGGCCGg- -3'
miRNA:   3'- aGUuUGAa----CAGCCGGU------UUGCCGGUag -5'
18054 5' -50.4 NC_004680.1 + 5456 0.67 0.899365
Target:  5'- -uGAACUUGUCggugucgguGGCCAG--GGCCGUg -3'
miRNA:   3'- agUUUGAACAG---------CCGGUUugCCGGUAg -5'
18054 5' -50.4 NC_004680.1 + 25429 0.67 0.884456
Target:  5'- cCGAGCUUGaC-GCCGAacugGCGGCCcUCg -3'
miRNA:   3'- aGUUUGAACaGcCGGUU----UGCCGGuAG- -5'
18054 5' -50.4 NC_004680.1 + 37933 0.68 0.876581
Target:  5'- cCGAACUgGUCacugaGGUugagcgucugCGGGCGGCCAUCg -3'
miRNA:   3'- aGUUUGAaCAG-----CCG----------GUUUGCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 57674 0.68 0.868436
Target:  5'- aUCGAGuCUUGuUCGGU--GAUGGCCAUg -3'
miRNA:   3'- -AGUUU-GAAC-AGCCGguUUGCCGGUAg -5'
18054 5' -50.4 NC_004680.1 + 7672 0.68 0.860026
Target:  5'- aUCGAGCgUGgCGGCCugcAGGCGGUguUCa -3'
miRNA:   3'- -AGUUUGaACaGCCGG---UUUGCCGguAG- -5'
18054 5' -50.4 NC_004680.1 + 26249 0.68 0.860026
Target:  5'- gUCGAugagguGCUUG-CGGCCu--UGGUCGUCa -3'
miRNA:   3'- -AGUU------UGAACaGCCGGuuuGCCGGUAG- -5'
18054 5' -50.4 NC_004680.1 + 42633 0.68 0.842448
Target:  5'- -uGAACaUGUCcuGGcCCAGGCGGCCcgCc -3'
miRNA:   3'- agUUUGaACAG--CC-GGUUUGCCGGuaG- -5'
18054 5' -50.4 NC_004680.1 + 32378 0.69 0.82392
Target:  5'- cCGGACacugGUcCGcGCCAuuucguGCGGCCGUCg -3'
miRNA:   3'- aGUUUGaa--CA-GC-CGGUu-----UGCCGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.