miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18055 3' -51.2 NC_004680.1 + 2664 1.07 0.003791
Target:  5'- cACGACGCCAGCACGUCAAAUACGACUc -3'
miRNA:   3'- -UGCUGCGGUCGUGCAGUUUAUGCUGA- -5'
18055 3' -51.2 NC_004680.1 + 16727 0.73 0.55348
Target:  5'- cGCcGCGCCAGCA-GUCGGAU-CGACa -3'
miRNA:   3'- -UGcUGCGGUCGUgCAGUUUAuGCUGa -5'
18055 3' -51.2 NC_004680.1 + 13053 0.72 0.620484
Target:  5'- gUGACGCC-GCACGgauGGUACGACc -3'
miRNA:   3'- uGCUGCGGuCGUGCaguUUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 20814 0.72 0.620484
Target:  5'- gACGcUGCCGGCGCGUUg---GCGACg -3'
miRNA:   3'- -UGCuGCGGUCGUGCAGuuuaUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 35008 0.72 0.631745
Target:  5'- gACGuuGCGCCgGGCACGUCuaguccuUGCGGCg -3'
miRNA:   3'- -UGC--UGCGG-UCGUGCAGuuu----AUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 45528 0.72 0.647509
Target:  5'- cGCGACGCCAGaCGCGccgcccucgcauucgUCAAG-ACGAUUg -3'
miRNA:   3'- -UGCUGCGGUC-GUGC---------------AGUUUaUGCUGA- -5'
18055 3' -51.2 NC_004680.1 + 44661 0.71 0.653134
Target:  5'- gACGugGCCgggauaggacaccAGgGCGUCGAucAUGCGGCg -3'
miRNA:   3'- -UGCugCGG-------------UCgUGCAGUU--UAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 41402 0.71 0.654258
Target:  5'- gAUGAUGCCGGCGgCGaUCAGcaGCGGCa -3'
miRNA:   3'- -UGCUGCGGUCGU-GC-AGUUuaUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 43230 0.71 0.676685
Target:  5'- cUGGCGUCGGCACGUCAu---CGAg- -3'
miRNA:   3'- uGCUGCGGUCGUGCAGUuuauGCUga -5'
18055 3' -51.2 NC_004680.1 + 852 0.71 0.698934
Target:  5'- uCGACGCCAGCcCGcUCGAAccgccgACGGCc -3'
miRNA:   3'- uGCUGCGGUCGuGC-AGUUUa-----UGCUGa -5'
18055 3' -51.2 NC_004680.1 + 37980 0.71 0.698934
Target:  5'- gGCGcACGCCGGUACG-CAuccucgGCGGCa -3'
miRNA:   3'- -UGC-UGCGGUCGUGCaGUuua---UGCUGa -5'
18055 3' -51.2 NC_004680.1 + 54965 0.7 0.753157
Target:  5'- gACGGgGCCGGCACGaUCGGugGCGGg- -3'
miRNA:   3'- -UGCUgCGGUCGUGC-AGUUuaUGCUga -5'
18055 3' -51.2 NC_004680.1 + 43531 0.69 0.763663
Target:  5'- uGCGACGCCGcCACGuUCGAccaggGCGGCc -3'
miRNA:   3'- -UGCUGCGGUcGUGC-AGUUua---UGCUGa -5'
18055 3' -51.2 NC_004680.1 + 25339 0.69 0.763663
Target:  5'- gACGAgggcCGCCAGUucgGCGUCAAGcuCGGCg -3'
miRNA:   3'- -UGCU----GCGGUCG---UGCAGUUUauGCUGa -5'
18055 3' -51.2 NC_004680.1 + 4949 0.69 0.774028
Target:  5'- cCGACGUCGGCACGgccg--ACGAUg -3'
miRNA:   3'- uGCUGCGGUCGUGCaguuuaUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 11418 0.69 0.801212
Target:  5'- gGCGGCGCgGGCACGcuucuccgccagUuuguggcgggcaucCAGAUACGACg -3'
miRNA:   3'- -UGCUGCGgUCGUGC------------A--------------GUUUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 28845 0.68 0.813834
Target:  5'- -gGACGCCGGCAUGUUcuucGCGAa- -3'
miRNA:   3'- ugCUGCGGUCGUGCAGuuuaUGCUga -5'
18055 3' -51.2 NC_004680.1 + 27667 0.68 0.823314
Target:  5'- -aGAUGCCGGgGCGgccauUCAcGUACGGCg -3'
miRNA:   3'- ugCUGCGGUCgUGC-----AGUuUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 41853 0.67 0.858183
Target:  5'- cAUGGCGCUuggacggGGCAgGUCcagcAGAUGCGGCg -3'
miRNA:   3'- -UGCUGCGG-------UCGUgCAG----UUUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 41818 0.67 0.85903
Target:  5'- aACGAgGCCGGCGUGUgGG--GCGGCUu -3'
miRNA:   3'- -UGCUgCGGUCGUGCAgUUuaUGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.