Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18055 | 3' | -51.2 | NC_004680.1 | + | 852 | 0.71 | 0.698934 |
Target: 5'- uCGACGCCAGCcCGcUCGAAccgccgACGGCc -3' miRNA: 3'- uGCUGCGGUCGuGC-AGUUUa-----UGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 2664 | 1.07 | 0.003791 |
Target: 5'- cACGACGCCAGCACGUCAAAUACGACUc -3' miRNA: 3'- -UGCUGCGGUCGUGCAGUUUAUGCUGA- -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 3993 | 0.66 | 0.915625 |
Target: 5'- uACGGCGCUgaccGGCACGgagugccgcUGCGACg -3' miRNA: 3'- -UGCUGCGG----UCGUGCaguuu----AUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 4949 | 0.69 | 0.774028 |
Target: 5'- cCGACGUCGGCACGgccg--ACGAUg -3' miRNA: 3'- uGCUGCGGUCGUGCaguuuaUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 11418 | 0.69 | 0.801212 |
Target: 5'- gGCGGCGCgGGCACGcuucuccgccagUuuguggcgggcaucCAGAUACGACg -3' miRNA: 3'- -UGCUGCGgUCGUGC------------A--------------GUUUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 13053 | 0.72 | 0.620484 |
Target: 5'- gUGACGCC-GCACGgauGGUACGACc -3' miRNA: 3'- uGCUGCGGuCGUGCaguUUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 16727 | 0.73 | 0.55348 |
Target: 5'- cGCcGCGCCAGCA-GUCGGAU-CGACa -3' miRNA: 3'- -UGcUGCGGUCGUgCAGUUUAuGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 18377 | 0.66 | 0.905039 |
Target: 5'- aACGugcCGCCAGUAgCGUCuuccgugACGACg -3' miRNA: 3'- -UGCu--GCGGUCGU-GCAGuuua---UGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 20814 | 0.72 | 0.620484 |
Target: 5'- gACGcUGCCGGCGCGUUg---GCGACg -3' miRNA: 3'- -UGCuGCGGUCGUGCAGuuuaUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 20888 | 0.66 | 0.930122 |
Target: 5'- aACG-CGCCGGCAgCGUCGAGgaaguuCGGg- -3' miRNA: 3'- -UGCuGCGGUCGU-GCAGUUUau----GCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 23150 | 0.66 | 0.926654 |
Target: 5'- aGCGGCGCCAGUgugaacacugauccaGuCGcCAAGaGCGGCg -3' miRNA: 3'- -UGCUGCGGUCG---------------U-GCaGUUUaUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 25339 | 0.69 | 0.763663 |
Target: 5'- gACGAgggcCGCCAGUucgGCGUCAAGcuCGGCg -3' miRNA: 3'- -UGCU----GCGGUCG---UGCAGUUUauGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 25643 | 0.66 | 0.905039 |
Target: 5'- cCGACGCC-GCACc-CAAAcacUGCGACa -3' miRNA: 3'- uGCUGCGGuCGUGcaGUUU---AUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 27667 | 0.68 | 0.823314 |
Target: 5'- -aGAUGCCGGgGCGgccauUCAcGUACGGCg -3' miRNA: 3'- ugCUGCGGUCgUGC-----AGUuUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 28340 | 0.66 | 0.897339 |
Target: 5'- gACGGCGCgGGCggugucgGCGUCGGGgcCGAUc -3' miRNA: 3'- -UGCUGCGgUCG-------UGCAGUUUauGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 28845 | 0.68 | 0.813834 |
Target: 5'- -gGACGCCGGCAUGUUcuucGCGAa- -3' miRNA: 3'- ugCUGCGGUCGUGCAGuuuaUGCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 34648 | 0.66 | 0.926654 |
Target: 5'- gGCGACGgCacccacaacaugggcGGCGCaGaCGGAUACGACUg -3' miRNA: 3'- -UGCUGCgG---------------UCGUG-CaGUUUAUGCUGA- -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 35008 | 0.72 | 0.631745 |
Target: 5'- gACGuuGCGCCgGGCACGUCuaguccuUGCGGCg -3' miRNA: 3'- -UGC--UGCGG-UCGUGCAGuuu----AUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 37980 | 0.71 | 0.698934 |
Target: 5'- gGCGcACGCCGGUACG-CAuccucgGCGGCa -3' miRNA: 3'- -UGC-UGCGGUCGUGCaGUuua---UGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 41402 | 0.71 | 0.654258 |
Target: 5'- gAUGAUGCCGGCGgCGaUCAGcaGCGGCa -3' miRNA: 3'- -UGCUGCGGUCGU-GC-AGUUuaUGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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