Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18055 | 3' | -51.2 | NC_004680.1 | + | 57239 | 0.67 | 0.874639 |
Target: 5'- gGCGGCGCCGGgGaauccgugccauuCGUCGAAcACGAg- -3' miRNA: 3'- -UGCUGCGGUCgU-------------GCAGUUUaUGCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 56231 | 0.66 | 0.912396 |
Target: 5'- gACGACcCCAGcCGCGUCGAAguucucauccucacCGACa -3' miRNA: 3'- -UGCUGcGGUC-GUGCAGUUUau------------GCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 54965 | 0.7 | 0.753157 |
Target: 5'- gACGGgGCCGGCACGaUCGGugGCGGg- -3' miRNA: 3'- -UGCUgCGGUCGUGC-AGUUuaUGCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 51099 | 0.66 | 0.924284 |
Target: 5'- cCGACGagaAGCGCGUCAAGUuccCGcACg -3' miRNA: 3'- uGCUGCgg-UCGUGCAGUUUAu--GC-UGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 45528 | 0.72 | 0.647509 |
Target: 5'- cGCGACGCCAGaCGCGccgcccucgcauucgUCAAG-ACGAUUg -3' miRNA: 3'- -UGCUGCGGUC-GUGC---------------AGUUUaUGCUGA- -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 44661 | 0.71 | 0.653134 |
Target: 5'- gACGugGCCgggauaggacaccAGgGCGUCGAucAUGCGGCg -3' miRNA: 3'- -UGCugCGG-------------UCgUGCAGUU--UAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 43531 | 0.69 | 0.763663 |
Target: 5'- uGCGACGCCGcCACGuUCGAccaggGCGGCc -3' miRNA: 3'- -UGCUGCGGUcGUGC-AGUUua---UGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 43513 | 0.66 | 0.904353 |
Target: 5'- cACGACGCCuccuccgcgaccuAGUGCGUUg---ACGACg -3' miRNA: 3'- -UGCUGCGG-------------UCGUGCAGuuuaUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 43230 | 0.71 | 0.676685 |
Target: 5'- cUGGCGUCGGCACGUCAu---CGAg- -3' miRNA: 3'- uGCUGCGGUCGUGCAGUuuauGCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 41853 | 0.67 | 0.858183 |
Target: 5'- cAUGGCGCUuggacggGGCAgGUCcagcAGAUGCGGCg -3' miRNA: 3'- -UGCUGCGG-------UCGUgCAG----UUUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 41818 | 0.67 | 0.85903 |
Target: 5'- aACGAgGCCGGCGUGUgGG--GCGGCUu -3' miRNA: 3'- -UGCUgCGGUCGUGCAgUUuaUGCUGA- -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 41443 | 0.66 | 0.911741 |
Target: 5'- -aGACuGUCAGCuucaGCGUguGGUGCGGCg -3' miRNA: 3'- ugCUG-CGGUCG----UGCAguUUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 41402 | 0.71 | 0.654258 |
Target: 5'- gAUGAUGCCGGCGgCGaUCAGcaGCGGCa -3' miRNA: 3'- -UGCUGCGGUCGU-GC-AGUUuaUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 37980 | 0.71 | 0.698934 |
Target: 5'- gGCGcACGCCGGUACG-CAuccucgGCGGCa -3' miRNA: 3'- -UGC-UGCGGUCGUGCaGUuua---UGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 35008 | 0.72 | 0.631745 |
Target: 5'- gACGuuGCGCCgGGCACGUCuaguccuUGCGGCg -3' miRNA: 3'- -UGC--UGCGG-UCGUGCAGuuu----AUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 34648 | 0.66 | 0.926654 |
Target: 5'- gGCGACGgCacccacaacaugggcGGCGCaGaCGGAUACGACUg -3' miRNA: 3'- -UGCUGCgG---------------UCGUG-CaGUUUAUGCUGA- -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 28845 | 0.68 | 0.813834 |
Target: 5'- -gGACGCCGGCAUGUUcuucGCGAa- -3' miRNA: 3'- ugCUGCGGUCGUGCAGuuuaUGCUga -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 28340 | 0.66 | 0.897339 |
Target: 5'- gACGGCGCgGGCggugucgGCGUCGGGgcCGAUc -3' miRNA: 3'- -UGCUGCGgUCG-------UGCAGUUUauGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 27667 | 0.68 | 0.823314 |
Target: 5'- -aGAUGCCGGgGCGgccauUCAcGUACGGCg -3' miRNA: 3'- ugCUGCGGUCgUGC-----AGUuUAUGCUGa -5' |
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18055 | 3' | -51.2 | NC_004680.1 | + | 25643 | 0.66 | 0.905039 |
Target: 5'- cCGACGCC-GCACc-CAAAcacUGCGACa -3' miRNA: 3'- uGCUGCGGuCGUGcaGUUU---AUGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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