miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18055 3' -51.2 NC_004680.1 + 41443 0.66 0.911741
Target:  5'- -aGACuGUCAGCuucaGCGUguGGUGCGGCg -3'
miRNA:   3'- ugCUG-CGGUCG----UGCAguUUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 41818 0.67 0.85903
Target:  5'- aACGAgGCCGGCGUGUgGG--GCGGCUu -3'
miRNA:   3'- -UGCUgCGGUCGUGCAgUUuaUGCUGA- -5'
18055 3' -51.2 NC_004680.1 + 41853 0.67 0.858183
Target:  5'- cAUGGCGCUuggacggGGCAgGUCcagcAGAUGCGGCg -3'
miRNA:   3'- -UGCUGCGG-------UCGUgCAG----UUUAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 43230 0.71 0.676685
Target:  5'- cUGGCGUCGGCACGUCAu---CGAg- -3'
miRNA:   3'- uGCUGCGGUCGUGCAGUuuauGCUga -5'
18055 3' -51.2 NC_004680.1 + 43513 0.66 0.904353
Target:  5'- cACGACGCCuccuccgcgaccuAGUGCGUUg---ACGACg -3'
miRNA:   3'- -UGCUGCGG-------------UCGUGCAGuuuaUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 43531 0.69 0.763663
Target:  5'- uGCGACGCCGcCACGuUCGAccaggGCGGCc -3'
miRNA:   3'- -UGCUGCGGUcGUGC-AGUUua---UGCUGa -5'
18055 3' -51.2 NC_004680.1 + 44661 0.71 0.653134
Target:  5'- gACGugGCCgggauaggacaccAGgGCGUCGAucAUGCGGCg -3'
miRNA:   3'- -UGCugCGG-------------UCgUGCAGUU--UAUGCUGa -5'
18055 3' -51.2 NC_004680.1 + 45528 0.72 0.647509
Target:  5'- cGCGACGCCAGaCGCGccgcccucgcauucgUCAAG-ACGAUUg -3'
miRNA:   3'- -UGCUGCGGUC-GUGC---------------AGUUUaUGCUGA- -5'
18055 3' -51.2 NC_004680.1 + 51099 0.66 0.924284
Target:  5'- cCGACGagaAGCGCGUCAAGUuccCGcACg -3'
miRNA:   3'- uGCUGCgg-UCGUGCAGUUUAu--GC-UGa -5'
18055 3' -51.2 NC_004680.1 + 54965 0.7 0.753157
Target:  5'- gACGGgGCCGGCACGaUCGGugGCGGg- -3'
miRNA:   3'- -UGCUgCGGUCGUGC-AGUUuaUGCUga -5'
18055 3' -51.2 NC_004680.1 + 56231 0.66 0.912396
Target:  5'- gACGACcCCAGcCGCGUCGAAguucucauccucacCGACa -3'
miRNA:   3'- -UGCUGcGGUC-GUGCAGUUUau------------GCUGa -5'
18055 3' -51.2 NC_004680.1 + 57239 0.67 0.874639
Target:  5'- gGCGGCGCCGGgGaauccgugccauuCGUCGAAcACGAg- -3'
miRNA:   3'- -UGCUGCGGUCgU-------------GCAGUUUaUGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.