miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18056 5' -57.7 NC_004680.1 + 53031 0.66 0.585275
Target:  5'- aGCCuCGcGGCGGACgaGAaugCCGCCGc -3'
miRNA:   3'- gUGGcGUaUCGCCUGgaCUa--GGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 25911 0.66 0.585275
Target:  5'- uCGCCGUgGUGGCGG-CCg---CCGCCGc -3'
miRNA:   3'- -GUGGCG-UAUCGCCuGGacuaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 44275 0.66 0.583127
Target:  5'- gCACCGCucucgcggacaagGUAGCGGucauagacacagaACgCgGAUCCGCCu -3'
miRNA:   3'- -GUGGCG-------------UAUCGCC-------------UG-GaCUAGGCGGu -5'
18056 5' -57.7 NC_004680.1 + 25907 0.66 0.585275
Target:  5'- gGCCGaacuggAGCGGGCCaacgcaacuAUCCGCCGc -3'
miRNA:   3'- gUGGCgua---UCGCCUGGac-------UAGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 27296 0.66 0.606826
Target:  5'- uGCCGCu--GCGGGCgCUGuuGUUgGCCGa -3'
miRNA:   3'- gUGGCGuauCGCCUG-GAC--UAGgCGGU- -5'
18056 5' -57.7 NC_004680.1 + 12786 0.67 0.521772
Target:  5'- gCGCCGauc-GCGGcgACCUGG-CCGCCGu -3'
miRNA:   3'- -GUGGCguauCGCC--UGGACUaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 12698 0.67 0.553252
Target:  5'- cCAUCGCGUccAGCGccaugccgccGGCCUGcaCCGCCAu -3'
miRNA:   3'- -GUGGCGUA--UCGC----------CUGGACuaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 23202 0.67 0.512461
Target:  5'- gGCgGCAggcaccuauguggagGGCGGcAUCUGGUCgGCCAg -3'
miRNA:   3'- gUGgCGUa--------------UCGCC-UGGACUAGgCGGU- -5'
18056 5' -57.7 NC_004680.1 + 26815 0.67 0.521772
Target:  5'- gACCGCAagUGGUGGugCc---CCGCCAa -3'
miRNA:   3'- gUGGCGU--AUCGCCugGacuaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 19097 0.67 0.541636
Target:  5'- gGCCGUGUGGCGGAUUUGccgaaccAUCCGaCGu -3'
miRNA:   3'- gUGGCGUAUCGCCUGGAC-------UAGGCgGU- -5'
18056 5' -57.7 NC_004680.1 + 20324 0.69 0.413542
Target:  5'- uGCCGC---GCGGACCggUGAUCUGCa- -3'
miRNA:   3'- gUGGCGuauCGCCUGG--ACUAGGCGgu -5'
18056 5' -57.7 NC_004680.1 + 51746 0.69 0.413542
Target:  5'- uCACCgagGUAUGcGCGGACCUucccgGAgCCGCCAg -3'
miRNA:   3'- -GUGG---CGUAU-CGCCUGGA-----CUaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 28169 0.69 0.432214
Target:  5'- uGCCGCGUuguauCGGGCCUGcauuUCCGCg- -3'
miRNA:   3'- gUGGCGUAuc---GCCUGGACu---AGGCGgu -5'
18056 5' -57.7 NC_004680.1 + 27710 0.69 0.422816
Target:  5'- gGCgGC-UGGCGGcaagaccgaACCUGAaCCGCCGa -3'
miRNA:   3'- gUGgCGuAUCGCC---------UGGACUaGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 52936 0.69 0.413542
Target:  5'- -gUCGCAUAGCGGcggcauUCUcGUCCGCCGc -3'
miRNA:   3'- guGGCGUAUCGCCu-----GGAcUAGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 1837 0.7 0.344071
Target:  5'- uCGCCGCGUgGGCGGGCC-GGUUC-CCGg -3'
miRNA:   3'- -GUGGCGUA-UCGCCUGGaCUAGGcGGU- -5'
18056 5' -57.7 NC_004680.1 + 41757 0.72 0.283398
Target:  5'- cCGCCGCAUcuGCuGGACCUGccCCGuCCAa -3'
miRNA:   3'- -GUGGCGUAu-CG-CCUGGACuaGGC-GGU- -5'
18056 5' -57.7 NC_004680.1 + 2673 0.74 0.198044
Target:  5'- aGCCGU--GGCGGAUCaGGUCCGCUAu -3'
miRNA:   3'- gUGGCGuaUCGCCUGGaCUAGGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 25609 0.76 0.149179
Target:  5'- gGCCGCGUGGCGGGgucgguuucucaggcCUUGAgccCCGCCAc -3'
miRNA:   3'- gUGGCGUAUCGCCU---------------GGACUa--GGCGGU- -5'
18056 5' -57.7 NC_004680.1 + 20749 0.77 0.121849
Target:  5'- gGCCGCcgAuCGGGCCUGuUCCGCCGc -3'
miRNA:   3'- gUGGCGuaUcGCCUGGACuAGGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.