Results 41 - 60 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 2687 | 0.7 | 0.269186 |
Target: 5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3' miRNA: 3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27829 | 0.7 | 0.275839 |
Target: 5'- gUugGCCGCagcucggcgGCCGGaCGGUGGUGGACg -3' miRNA: 3'- -AugUGGUGg--------UGGCC-GCCGCCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 57635 | 0.7 | 0.282622 |
Target: 5'- gGCACCACCAaacCCGG-GGCGGa-GACa -3' miRNA: 3'- aUGUGGUGGU---GGCCgCCGCCgcUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12466 | 0.7 | 0.289537 |
Target: 5'- gACACCGgaGCCGGaccCGGCaGUGGACCc -3' miRNA: 3'- aUGUGGUggUGGCC---GCCGcCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 38440 | 0.69 | 0.296584 |
Target: 5'- aACGCC-UCACgGGCaGCGGCGAGa- -3' miRNA: 3'- aUGUGGuGGUGgCCGcCGCCGCUUgg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 13630 | 0.69 | 0.301596 |
Target: 5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3' miRNA: 3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 55871 | 0.69 | 0.303763 |
Target: 5'- --gGCCAUCGCgagggUGGCGGCuuuGGCGAGCg -3' miRNA: 3'- augUGGUGGUG-----GCCGCCG---CCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27433 | 0.69 | 0.311076 |
Target: 5'- cACACCACCAUCGGauGCcuGCGAGa- -3' miRNA: 3'- aUGUGGUGGUGGCCgcCGc-CGCUUgg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 9523 | 0.69 | 0.311076 |
Target: 5'- ----gCugCugCGGUGGCGGCGAAg- -3' miRNA: 3'- augugGugGugGCCGCCGCCGCUUgg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25036 | 0.69 | 0.31777 |
Target: 5'- aGCACCugggcagGCaggucCCGGUGGCGGUgGGGCCg -3' miRNA: 3'- aUGUGG-------UGgu---GGCCGCCGCCG-CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25152 | 0.69 | 0.318521 |
Target: 5'- aACGCCACCACCaccuugucguGGCGcaGCGGaaaaGGugCg -3' miRNA: 3'- aUGUGGUGGUGG----------CCGC--CGCCg---CUugG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 971 | 0.69 | 0.318521 |
Target: 5'- gACGCC-CCACCGGauugcCGGCaGCGucaAACCc -3' miRNA: 3'- aUGUGGuGGUGGCC-----GCCGcCGC---UUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25702 | 0.69 | 0.318521 |
Target: 5'- cACGCCugCGCCacaGGCcccGGCGGagcagGGGCCa -3' miRNA: 3'- aUGUGGugGUGG---CCG---CCGCCg----CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 26797 | 0.69 | 0.333811 |
Target: 5'- gGCACCGgCAUCGGCGaugaccgcaaGUGGUGGugCc -3' miRNA: 3'- aUGUGGUgGUGGCCGC----------CGCCGCUugG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 22061 | 0.68 | 0.341655 |
Target: 5'- gUAUAUCGCgAugcgugguCCGGCGGCGuuCGAGCCg -3' miRNA: 3'- -AUGUGGUGgU--------GGCCGCCGCc-GCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 58401 | 0.68 | 0.348827 |
Target: 5'- gGCGCCggcaggugaGCCAgugggcuguggugUCGGCGGCuuuGGCGAugCg -3' miRNA: 3'- aUGUGG---------UGGU-------------GGCCGCCG---CCGCUugG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12283 | 0.68 | 0.349631 |
Target: 5'- aACGCUGCCGCggaCGG-GGCGGCu-ACCg -3' miRNA: 3'- aUGUGGUGGUG---GCCgCCGCCGcuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 58688 | 0.68 | 0.349631 |
Target: 5'- cUACACCAaugCACUGGCGGaGGUGcGCa -3' miRNA: 3'- -AUGUGGUg--GUGGCCGCCgCCGCuUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 21441 | 0.68 | 0.356922 |
Target: 5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3' miRNA: 3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 13252 | 0.68 | 0.357739 |
Target: 5'- gUGCACCAUUuCUGGU-GCGGCGGuCCg -3' miRNA: 3'- -AUGUGGUGGuGGCCGcCGCCGCUuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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