miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 41281 0.71 0.2262
Target:  5'- aUGCACCAacaaCAUUGGCGGUauuGGUGGACg -3'
miRNA:   3'- -AUGUGGUg---GUGGCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 18206 0.71 0.2262
Target:  5'- gGCACCACCugcaACCGGau-CGGCGcGCCg -3'
miRNA:   3'- aUGUGGUGG----UGGCCgccGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 27919 0.71 0.231965
Target:  5'- -cCACCACCGuCCGGCcgccgagcuGCGGCcAACCa -3'
miRNA:   3'- auGUGGUGGU-GGCCGc--------CGCCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 49388 0.71 0.237259
Target:  5'- aGCGCCGuuGCuUGGCugcgauuGGCGGCGGAUCg -3'
miRNA:   3'- aUGUGGUggUG-GCCG-------CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 24217 0.71 0.243866
Target:  5'- gGCACCACCcuucccggcACCGGCa-CGGCGggUg -3'
miRNA:   3'- aUGUGGUGG---------UGGCCGccGCCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 26891 0.71 0.249385
Target:  5'- gGCACCACCACUuGCGGUcaucgccgaugccGGUGccGACCu -3'
miRNA:   3'- aUGUGGUGGUGGcCGCCG-------------CCGC--UUGG- -5'
18057 5' -60.4 NC_004680.1 + 43157 0.7 0.255638
Target:  5'- cACACCuuCACCaGUGGgacucguucuucuCGGCGAGCCu -3'
miRNA:   3'- aUGUGGugGUGGcCGCC-------------GCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 34660 0.7 0.25627
Target:  5'- cGCACCAUCcCCGGCGaCGGC--ACCc -3'
miRNA:   3'- aUGUGGUGGuGGCCGCcGCCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 27124 0.7 0.258812
Target:  5'- uUGCGCgaACuCGCCGGCcaaccugggguuguuGGCGGCGcGCCu -3'
miRNA:   3'- -AUGUGg-UG-GUGGCCG---------------CCGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 39892 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39844 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 21313 0.7 0.262664
Target:  5'- cUGCAUCGaacccaauauCCACCGGCuccGGCGGCaccGGCCa -3'
miRNA:   3'- -AUGUGGU----------GGUGGCCG---CCGCCGc--UUGG- -5'
18057 5' -60.4 NC_004680.1 + 39736 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCg -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39664 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39700 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 39808 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucucuGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 12163 0.7 0.262664
Target:  5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3'
miRNA:   3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 2687 0.7 0.269186
Target:  5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3'
miRNA:   3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.