miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 18441 0.67 0.436439
Target:  5'- ---uCCGCUAUCcGCGGCGGCGuGCa -3'
miRNA:   3'- auguGGUGGUGGcCGCCGCCGCuUGg -5'
18057 5' -60.4 NC_004680.1 + 27694 0.67 0.436439
Target:  5'- aACGCgucaACCAUUgGGCGGCuGGCGGcaagACCg -3'
miRNA:   3'- aUGUGg---UGGUGG-CCGCCG-CCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 12298 0.67 0.436439
Target:  5'- gUGC-CCAUCccgACCaguggGGCGGgGGCGAccGCCg -3'
miRNA:   3'- -AUGuGGUGG---UGG-----CCGCCgCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 57845 0.67 0.427206
Target:  5'- -cUACCACCuauCCGGUGGUGGa-GGCg -3'
miRNA:   3'- auGUGGUGGu--GGCCGCCGCCgcUUGg -5'
18057 5' -60.4 NC_004680.1 + 19517 0.67 0.427206
Target:  5'- -uCACCGCgCACCcauGUGGUGGCGuugaacuuACCg -3'
miRNA:   3'- auGUGGUG-GUGGc--CGCCGCCGCu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 34353 0.67 0.427206
Target:  5'- aGCGCC-CUGCCGG-GGaUGGUGAAUCc -3'
miRNA:   3'- aUGUGGuGGUGGCCgCC-GCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 56038 0.67 0.418091
Target:  5'- cGCACCAUCugCuaCuGCGGCGAcGCCg -3'
miRNA:   3'- aUGUGGUGGugGccGcCGCCGCU-UGG- -5'
18057 5' -60.4 NC_004680.1 + 43041 0.67 0.418091
Target:  5'- aACGCCgACCACUGGUG-CaGGCucGCCg -3'
miRNA:   3'- aUGUGG-UGGUGGCCGCcG-CCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 37157 0.67 0.418091
Target:  5'- gACGCCAaC-CUGGCGGCuGCcAGCCg -3'
miRNA:   3'- aUGUGGUgGuGGCCGCCGcCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 45274 0.67 0.418091
Target:  5'- gACGCCA-CGuuGGUGucgucGCGGCGAgaGCCg -3'
miRNA:   3'- aUGUGGUgGUggCCGC-----CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 42829 0.67 0.417186
Target:  5'- aGCG-CACUGCCGGCGGUcccagccacgaccGGgGAACUu -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCG-------------CCgCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 886 0.67 0.409095
Target:  5'- gACGCUGCCGgcaauCCGGUGG-GGCGu-CCg -3'
miRNA:   3'- aUGUGGUGGU-----GGCCGCCgCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 58986 0.67 0.409095
Target:  5'- cACACCACaCACCGcUGG-GGC-AACCa -3'
miRNA:   3'- aUGUGGUG-GUGGCcGCCgCCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 7344 0.67 0.409095
Target:  5'- aAC-CCGCUgacggagauACCGGuCGGCGGUGGugUu -3'
miRNA:   3'- aUGuGGUGG---------UGGCC-GCCGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 33235 0.67 0.40642
Target:  5'- aGCAuCCACUucuCCacaguuguggaugaGGUGGUGGCGAugCg -3'
miRNA:   3'- aUGU-GGUGGu--GG--------------CCGCCGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 749 0.67 0.40022
Target:  5'- gGCACCguuuggcugGCCGUCGGCGGUucGaGCGGGCUg -3'
miRNA:   3'- aUGUGG---------UGGUGGCCGCCG--C-CGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 38225 0.67 0.40022
Target:  5'- aACGCCAgCCugCGGUGcCGGCuacaaGAACUa -3'
miRNA:   3'- aUGUGGU-GGugGCCGCcGCCG-----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 43484 0.67 0.39934
Target:  5'- gGCACCGCUACaCGugggacaaguuucGCGGCaGGUGGgacACCg -3'
miRNA:   3'- aUGUGGUGGUG-GC-------------CGCCG-CCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 45155 0.67 0.39147
Target:  5'- cACACCAUCGCaGGCcccguggucucGGCGGCucucGCCg -3'
miRNA:   3'- aUGUGGUGGUGgCCG-----------CCGCCGcu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 12431 0.67 0.39147
Target:  5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3'
miRNA:   3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.