miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 12466 0.7 0.289537
Target:  5'- gACACCGgaGCCGGaccCGGCaGUGGACCc -3'
miRNA:   3'- aUGUGGUggUGGCC---GCCGcCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 12520 0.77 0.084729
Target:  5'- -cCGCCACCACCGGUGGUGGgcagcgGGGCUg -3'
miRNA:   3'- auGUGGUGGUGGCCGCCGCCg-----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 13252 0.68 0.357739
Target:  5'- gUGCACCAUUuCUGGU-GCGGCGGuCCg -3'
miRNA:   3'- -AUGUGGUGGuGGCCGcCGCCGCUuGG- -5'
18057 5' -60.4 NC_004680.1 + 13630 0.69 0.301596
Target:  5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3'
miRNA:   3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 14699 0.66 0.474473
Target:  5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3'
miRNA:   3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 18206 0.71 0.2262
Target:  5'- gGCACCACCugcaACCGGau-CGGCGcGCCg -3'
miRNA:   3'- aUGUGGUGG----UGGCCgccGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 18441 0.67 0.436439
Target:  5'- ---uCCGCUAUCcGCGGCGGCGuGCa -3'
miRNA:   3'- auguGGUGGUGGcCGCCGCCGCuUGg -5'
18057 5' -60.4 NC_004680.1 + 19433 0.79 0.06426
Target:  5'- aACGCCACCACaugGGUGcGCGGUGAGCa -3'
miRNA:   3'- aUGUGGUGGUGg--CCGC-CGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 19517 0.67 0.427206
Target:  5'- -uCACCGCgCACCcauGUGGUGGCGuugaacuuACCg -3'
miRNA:   3'- auGUGGUG-GUGGc--CGCCGCCGCu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 19601 0.71 0.220557
Target:  5'- ---gUUACCACCGGCGGCGccgucaccCGGGCCa -3'
miRNA:   3'- auguGGUGGUGGCCGCCGCc-------GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 19820 0.66 0.471562
Target:  5'- cGCGCCcuuACCGCCGuuacccgcuccaccaGGUGGCGuACCg -3'
miRNA:   3'- aUGUGG---UGGUGGCcg-------------CCGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 20145 0.68 0.371823
Target:  5'- cACACUGCgggugauuuguuguCGCCggaggaucaGGCGGCGGUGGAUCu -3'
miRNA:   3'- aUGUGGUG--------------GUGG---------CCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 21313 0.7 0.262664
Target:  5'- cUGCAUCGaacccaauauCCACCGGCuccGGCGGCaccGGCCa -3'
miRNA:   3'- -AUGUGGU----------GGUGGCCG---CCGCCGc--UUGG- -5'
18057 5' -60.4 NC_004680.1 + 21441 0.68 0.356922
Target:  5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3'
miRNA:   3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 21575 0.72 0.188688
Target:  5'- cGCACuCACCcagcccggGCCGGUGGCcucaucuGGCGAGCa -3'
miRNA:   3'- aUGUG-GUGG--------UGGCCGCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 21773 0.66 0.445785
Target:  5'- -uCGCgGCCgaauaaguggGCUGGCauGGCGGUGAACUu -3'
miRNA:   3'- auGUGgUGG----------UGGCCG--CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 22061 0.68 0.341655
Target:  5'- gUAUAUCGCgAugcgugguCCGGCGGCGuuCGAGCCg -3'
miRNA:   3'- -AUGUGGUGgU--------GGCCGCCGCc-GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 22775 0.66 0.494103
Target:  5'- gGCGuCCGCC-CCGGgagaaGGCGGcCGAGUCg -3'
miRNA:   3'- aUGU-GGUGGuGGCCg----CCGCC-GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 24217 0.71 0.243866
Target:  5'- gGCACCACCcuucccggcACCGGCa-CGGCGggUg -3'
miRNA:   3'- aUGUGGUGG---------UGGCCGccGCCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 24470 0.68 0.382845
Target:  5'- gACACUG--AUCGGUGGCGGCGGAa- -3'
miRNA:   3'- aUGUGGUggUGGCCGCCGCCGCUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.