miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 285 0.66 0.474473
Target:  5'- cACACaaCACCAuCCGGCaGGUcuGGCGccACCa -3'
miRNA:   3'- aUGUG--GUGGU-GGCCG-CCG--CCGCu-UGG- -5'
18057 5' -60.4 NC_004680.1 + 749 0.67 0.40022
Target:  5'- gGCACCguuuggcugGCCGUCGGCGGUucGaGCGGGCUg -3'
miRNA:   3'- aUGUGG---------UGGUGGCCGCCG--C-CGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 886 0.67 0.409095
Target:  5'- gACGCUGCCGgcaauCCGGUGG-GGCGu-CCg -3'
miRNA:   3'- aUGUGGUGGU-----GGCCGCCgCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 971 0.69 0.318521
Target:  5'- gACGCC-CCACCGGauugcCGGCaGCGucaAACCc -3'
miRNA:   3'- aUGUGGuGGUGGCC-----GCCGcCGC---UUGG- -5'
18057 5' -60.4 NC_004680.1 + 2687 0.7 0.269186
Target:  5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3'
miRNA:   3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 2867 0.86 0.018055
Target:  5'- -uCGCCGCCGCCGGUGGUGGUGuACCa -3'
miRNA:   3'- auGUGGUGGUGGCCGCCGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 2948 1.1 0.000308
Target:  5'- gUACACCACCACCGGCGGCGGCGAACCg -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 4216 0.68 0.365978
Target:  5'- gACAUCGCagACC-GCGGCGGaCGcGCCg -3'
miRNA:   3'- aUGUGGUGg-UGGcCGCCGCC-GCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 5210 0.68 0.365148
Target:  5'- cUACAagGCCGCUGGcCGGCagaccucGGCGGACg -3'
miRNA:   3'- -AUGUggUGGUGGCC-GCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 7344 0.67 0.409095
Target:  5'- aAC-CCGCUgacggagauACCGGuCGGCGGUGGugUu -3'
miRNA:   3'- aUGuGGUGG---------UGGCC-GCCGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 8935 0.68 0.374347
Target:  5'- cGCACC-UCAC--GCGGCGGCGAcacacgcuuACCg -3'
miRNA:   3'- aUGUGGuGGUGgcCGCCGCCGCU---------UGG- -5'
18057 5' -60.4 NC_004680.1 + 9523 0.69 0.311076
Target:  5'- ----gCugCugCGGUGGCGGCGAAg- -3'
miRNA:   3'- augugGugGugGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 10222 0.66 0.455242
Target:  5'- -uCGCCGCCACCGGCaaGGuCaGCauGGAUCa -3'
miRNA:   3'- auGUGGUGGUGGCCG--CC-GcCG--CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 10306 0.72 0.209631
Target:  5'- cAUGCUgACCuuGCCGGUGGCGGCGAuuuGCa -3'
miRNA:   3'- aUGUGG-UGG--UGGCCGCCGCCGCU---UGg -5'
18057 5' -60.4 NC_004680.1 + 12163 0.7 0.262664
Target:  5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3'
miRNA:   3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 12283 0.68 0.349631
Target:  5'- aACGCUGCCGCggaCGG-GGCGGCu-ACCg -3'
miRNA:   3'- aUGUGGUGGUG---GCCgCCGCCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 12298 0.67 0.436439
Target:  5'- gUGC-CCAUCccgACCaguggGGCGGgGGCGAccGCCg -3'
miRNA:   3'- -AUGuGGUGG---UGG-----CCGCCgCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 12359 0.68 0.382845
Target:  5'- cACACCAaCACCaGCGccuugGGCGGGCCa -3'
miRNA:   3'- aUGUGGUgGUGGcCGCcg---CCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 12431 0.67 0.39147
Target:  5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3'
miRNA:   3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 12439 0.87 0.016576
Target:  5'- cUGC-CCACCACCGGUGGUGGCGGcgGCCc -3'
miRNA:   3'- -AUGuGGUGGUGGCCGCCGCCGCU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.