miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 25152 0.69 0.318521
Target:  5'- aACGCCACCACCaccuugucguGGCGcaGCGGaaaaGGugCg -3'
miRNA:   3'- aUGUGGUGGUGG----------CCGC--CGCCg---CUugG- -5'
18057 5' -60.4 NC_004680.1 + 12163 0.7 0.262664
Target:  5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3'
miRNA:   3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 2687 0.7 0.269186
Target:  5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3'
miRNA:   3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 27829 0.7 0.275839
Target:  5'- gUugGCCGCagcucggcgGCCGGaCGGUGGUGGACg -3'
miRNA:   3'- -AugUGGUGg--------UGGCC-GCCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 13630 0.69 0.301596
Target:  5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3'
miRNA:   3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 9523 0.69 0.311076
Target:  5'- ----gCugCugCGGUGGCGGCGAAg- -3'
miRNA:   3'- augugGugGugGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 25036 0.69 0.31777
Target:  5'- aGCACCugggcagGCaggucCCGGUGGCGGUgGGGCCg -3'
miRNA:   3'- aUGUGG-------UGgu---GGCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 24217 0.71 0.243866
Target:  5'- gGCACCACCcuucccggcACCGGCa-CGGCGggUg -3'
miRNA:   3'- aUGUGGUGG---------UGGCCGccGCCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 49388 0.71 0.237259
Target:  5'- aGCGCCGuuGCuUGGCugcgauuGGCGGCGGAUCg -3'
miRNA:   3'- aUGUGGUggUG-GCCG-------CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 41281 0.71 0.2262
Target:  5'- aUGCACCAacaaCAUUGGCGGUauuGGUGGACg -3'
miRNA:   3'- -AUGUGGUg---GUGGCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 2867 0.86 0.018055
Target:  5'- -uCGCCGCCGCCGGUGGUGGUGuACCa -3'
miRNA:   3'- auGUGGUGGUGGCCGCCGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 19433 0.79 0.06426
Target:  5'- aACGCCACCACaugGGUGcGCGGUGAGCa -3'
miRNA:   3'- aUGUGGUGGUGg--CCGC-CGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 28803 0.78 0.073816
Target:  5'- gGCACCGCUACCGGaGGCGaucGCGAucACCa -3'
miRNA:   3'- aUGUGGUGGUGGCCgCCGC---CGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 24897 0.78 0.078009
Target:  5'- gGCGgUGCCGCCGGCGGUGGUGGcgguuCCg -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCGCCGCUu----GG- -5'
18057 5' -60.4 NC_004680.1 + 27258 0.75 0.124007
Target:  5'- cACACC-CaggaaGgCGGCGGCGGCGAcgcuGCCg -3'
miRNA:   3'- aUGUGGuGg----UgGCCGCCGCCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 24939 0.73 0.170497
Target:  5'- aGCACCAuCUACuCGGUggcaaaGGCGGCGAugugACCg -3'
miRNA:   3'- aUGUGGU-GGUG-GCCG------CCGCCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 40887 0.73 0.179621
Target:  5'- gUGgACCACCGCCcGCGGC-GUGGACUa -3'
miRNA:   3'- -AUgUGGUGGUGGcCGCCGcCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 43367 0.72 0.188688
Target:  5'- cACACCAaguaCugcucugauucguGCCGGCaGGCGGCGAuCCu -3'
miRNA:   3'- aUGUGGUg---G-------------UGGCCG-CCGCCGCUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.