miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 45875 0.66 0.494103
Target:  5'- gUACGCCAgCGaCGGUGGUccGGUGAAUg -3'
miRNA:   3'- -AUGUGGUgGUgGCCGCCG--CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 12431 0.67 0.39147
Target:  5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3'
miRNA:   3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 43619 0.67 0.390601
Target:  5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3'
miRNA:   3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5'
18057 5' -60.4 NC_004680.1 + 2948 1.1 0.000308
Target:  5'- gUACACCACCACCGGCGGCGGCGAACCg -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 33970 0.66 0.474473
Target:  5'- cUGCAUCGCCACauacaaCGGCGGCaacaacGGC--ACCu -3'
miRNA:   3'- -AUGUGGUGGUG------GCCGCCG------CCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 285 0.66 0.474473
Target:  5'- cACACaaCACCAuCCGGCaGGUcuGGCGccACCa -3'
miRNA:   3'- aUGUG--GUGGU-GGCCG-CCG--CCGCu-UGG- -5'
18057 5' -60.4 NC_004680.1 + 26040 0.66 0.471562
Target:  5'- gACAUCACCAUCgucuucgauGGUcaccacggcaucauGGCGGCGGAUa -3'
miRNA:   3'- aUGUGGUGGUGG---------CCG--------------CCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 42771 0.66 0.464806
Target:  5'- cUGCACC-CCACCGucGCcGCGGCau-CCg -3'
miRNA:   3'- -AUGUGGuGGUGGC--CGcCGCCGcuuGG- -5'
18057 5' -60.4 NC_004680.1 + 19517 0.67 0.427206
Target:  5'- -uCACCGCgCACCcauGUGGUGGCGuugaacuuACCg -3'
miRNA:   3'- auGUGGUG-GUGGc--CGCCGCCGCu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 33235 0.67 0.40642
Target:  5'- aGCAuCCACUucuCCacaguuguggaugaGGUGGUGGCGAugCg -3'
miRNA:   3'- aUGU-GGUGGu--GG--------------CCGCCGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 45274 0.67 0.418091
Target:  5'- gACGCCA-CGuuGGUGucgucGCGGCGAgaGCCg -3'
miRNA:   3'- aUGUGGUgGUggCCGC-----CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 42532 0.66 0.449554
Target:  5'- cGCGCC-CCGCCucaugcgacaccccuGaGCGGCGGaUGAACg -3'
miRNA:   3'- aUGUGGuGGUGG---------------C-CGCCGCC-GCUUGg -5'
18057 5' -60.4 NC_004680.1 + 39384 0.66 0.484241
Target:  5'- -cCAUCugCACCagGGCGGCcagugGGCGuGCUg -3'
miRNA:   3'- auGUGGugGUGG--CCGCCG-----CCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 37157 0.67 0.418091
Target:  5'- gACGCCAaC-CUGGCGGCuGCcAGCCg -3'
miRNA:   3'- aUGUGGUgGuGGCCGCCGcCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 14699 0.66 0.474473
Target:  5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3'
miRNA:   3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 39940 0.66 0.455242
Target:  5'- gGCGCUcUCugCGGCGcucccuGCGGCGcuCCg -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 42829 0.67 0.417186
Target:  5'- aGCG-CACUGCCGGCGGUcccagccacgaccGGgGAACUu -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCG-------------CCgCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 28715 0.67 0.39147
Target:  5'- cGCGCCACCA-CGGCGG-GGUuucacgcauGCCg -3'
miRNA:   3'- aUGUGGUGGUgGCCGCCgCCGcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 25421 0.66 0.474473
Target:  5'- gACGCCGa-ACUGGCGGCccucgucuacgaGGCGAugACUg -3'
miRNA:   3'- aUGUGGUggUGGCCGCCG------------CCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 19820 0.66 0.471562
Target:  5'- cGCGCCcuuACCGCCGuuacccgcuccaccaGGUGGCGuACCg -3'
miRNA:   3'- aUGUGG---UGGUGGCcg-------------CCGCCGCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.