miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 2948 1.1 0.000308
Target:  5'- gUACACCACCACCGGCGGCGGCGAACCg -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 12439 0.87 0.016576
Target:  5'- cUGC-CCACCACCGGUGGUGGCGGcgGCCc -3'
miRNA:   3'- -AUGuGGUGGUGGCCGCCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 2867 0.86 0.018055
Target:  5'- -uCGCCGCCGCCGGUGGUGGUGuACCa -3'
miRNA:   3'- auGUGGUGGUGGCCGCCGCCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 24980 0.79 0.062497
Target:  5'- -cCGCCACCACCGcCGGCGGCaccGCCa -3'
miRNA:   3'- auGUGGUGGUGGCcGCCGCCGcu-UGG- -5'
18057 5' -60.4 NC_004680.1 + 19433 0.79 0.06426
Target:  5'- aACGCCACCACaugGGUGcGCGGUGAGCa -3'
miRNA:   3'- aUGUGGUGGUGg--CCGC-CGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 28803 0.78 0.073816
Target:  5'- gGCACCGCUACCGGaGGCGaucGCGAucACCa -3'
miRNA:   3'- aUGUGGUGGUGGCCgCCGC---CGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 34546 0.78 0.075885
Target:  5'- aGCAUCGCCgacuACC-GCGGCGGCGAACa -3'
miRNA:   3'- aUGUGGUGG----UGGcCGCCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 24897 0.78 0.078009
Target:  5'- gGCGgUGCCGCCGGCGGUGGUGGcgguuCCg -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCGCCGCUu----GG- -5'
18057 5' -60.4 NC_004680.1 + 12520 0.77 0.084729
Target:  5'- -cCGCCACCACCGGUGGUGGgcagcgGGGCUg -3'
miRNA:   3'- auGUGGUGGUGGCCGCCGCCg-----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 27258 0.75 0.124007
Target:  5'- cACACC-CaggaaGgCGGCGGCGGCGAcgcuGCCg -3'
miRNA:   3'- aUGUGGuGg----UgGCCGCCGCCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 25239 0.73 0.170497
Target:  5'- cUGCGCCACgACaagguGGUGGUGGCGuugGCCu -3'
miRNA:   3'- -AUGUGGUGgUGg----CCGCCGCCGCu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 24939 0.73 0.170497
Target:  5'- aGCACCAuCUACuCGGUggcaaaGGCGGCGAugugACCg -3'
miRNA:   3'- aUGUGGU-GGUG-GCCG------CCGCCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 40887 0.73 0.179621
Target:  5'- gUGgACCACCGCCcGCGGC-GUGGACUa -3'
miRNA:   3'- -AUgUGGUGGUGGcCGCCGcCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 41647 0.73 0.179621
Target:  5'- gUACACCGauUCugCGGCGGCGaCGAagaaaGCCa -3'
miRNA:   3'- -AUGUGGU--GGugGCCGCCGCcGCU-----UGG- -5'
18057 5' -60.4 NC_004680.1 + 21575 0.72 0.188688
Target:  5'- cGCACuCACCcagcccggGCCGGUGGCcucaucuGGCGAGCa -3'
miRNA:   3'- aUGUG-GUGG--------UGGCCGCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 43367 0.72 0.188688
Target:  5'- cACACCAaguaCugcucugauucguGCCGGCaGGCGGCGAuCCu -3'
miRNA:   3'- aUGUGGUg---G-------------UGGCCG-CCGCCGCUuGG- -5'
18057 5' -60.4 NC_004680.1 + 10306 0.72 0.209631
Target:  5'- cAUGCUgACCuuGCCGGUGGCGGCGAuuuGCa -3'
miRNA:   3'- aUGUGG-UGG--UGGCCGCCGCCGCU---UGg -5'
18057 5' -60.4 NC_004680.1 + 56470 0.72 0.209631
Target:  5'- cUGCGCCGCUGuuGGUGGCGucgaggagcGCGGACa -3'
miRNA:   3'- -AUGUGGUGGUggCCGCCGC---------CGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 57930 0.71 0.218888
Target:  5'- aGCGCCuccACCACCGGauaGGUGGUagagguggaagccgGGGCCg -3'
miRNA:   3'- aUGUGG---UGGUGGCCg--CCGCCG--------------CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 19601 0.71 0.220557
Target:  5'- ---gUUACCACCGGCGGCGccgucaccCGGGCCa -3'
miRNA:   3'- auguGGUGGUGGCCGCCGCc-------GCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.