miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 58986 0.67 0.409095
Target:  5'- cACACCACaCACCGcUGG-GGC-AACCa -3'
miRNA:   3'- aUGUGGUG-GUGGCcGCCgCCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 58688 0.68 0.349631
Target:  5'- cUACACCAaugCACUGGCGGaGGUGcGCa -3'
miRNA:   3'- -AUGUGGUg--GUGGCCGCCgCCGCuUGg -5'
18057 5' -60.4 NC_004680.1 + 58401 0.68 0.348827
Target:  5'- gGCGCCggcaggugaGCCAgugggcuguggugUCGGCGGCuuuGGCGAugCg -3'
miRNA:   3'- aUGUGG---------UGGU-------------GGCCGCCG---CCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 57930 0.71 0.218888
Target:  5'- aGCGCCuccACCACCGGauaGGUGGUagagguggaagccgGGGCCg -3'
miRNA:   3'- aUGUGG---UGGUGGCCg--CCGCCG--------------CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 57845 0.67 0.427206
Target:  5'- -cUACCACCuauCCGGUGGUGGa-GGCg -3'
miRNA:   3'- auGUGGUGGu--GGCCGCCGCCgcUUGg -5'
18057 5' -60.4 NC_004680.1 + 57635 0.7 0.282622
Target:  5'- gGCACCACCAaacCCGG-GGCGGa-GACa -3'
miRNA:   3'- aUGUGGUGGU---GGCCgCCGCCgcUUGg -5'
18057 5' -60.4 NC_004680.1 + 57318 0.66 0.445785
Target:  5'- --gACCGCgguaaggauccaCGCCGGC--CGGCGAACCu -3'
miRNA:   3'- augUGGUG------------GUGGCCGccGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 56470 0.72 0.209631
Target:  5'- cUGCGCCGCUGuuGGUGGCGucgaggagcGCGGACa -3'
miRNA:   3'- -AUGUGGUGGUggCCGCCGC---------CGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 56038 0.67 0.418091
Target:  5'- cGCACCAUCugCuaCuGCGGCGAcGCCg -3'
miRNA:   3'- aUGUGGUGGugGccGcCGCCGCU-UGG- -5'
18057 5' -60.4 NC_004680.1 + 55871 0.69 0.303763
Target:  5'- --gGCCAUCGCgagggUGGCGGCuuuGGCGAGCg -3'
miRNA:   3'- augUGGUGGUG-----GCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 49388 0.71 0.237259
Target:  5'- aGCGCCGuuGCuUGGCugcgauuGGCGGCGGAUCg -3'
miRNA:   3'- aUGUGGUggUG-GCCG-------CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 45875 0.66 0.494103
Target:  5'- gUACGCCAgCGaCGGUGGUccGGUGAAUg -3'
miRNA:   3'- -AUGUGGUgGUgGCCGCCG--CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 45274 0.67 0.418091
Target:  5'- gACGCCA-CGuuGGUGucgucGCGGCGAgaGCCg -3'
miRNA:   3'- aUGUGGUgGUggCCGC-----CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 45155 0.67 0.39147
Target:  5'- cACACCAUCGCaGGCcccguggucucGGCGGCucucGCCg -3'
miRNA:   3'- aUGUGGUGGUGgCCG-----------CCGCCGcu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 43619 0.67 0.390601
Target:  5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3'
miRNA:   3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5'
18057 5' -60.4 NC_004680.1 + 43534 0.68 0.365978
Target:  5'- gACGCCGCCACguucgaccagGGCGGCcGgGAACg -3'
miRNA:   3'- aUGUGGUGGUGg---------CCGCCGcCgCUUGg -5'
18057 5' -60.4 NC_004680.1 + 43484 0.67 0.39934
Target:  5'- gGCACCGCUACaCGugggacaaguuucGCGGCaGGUGGgacACCg -3'
miRNA:   3'- aUGUGGUGGUG-GC-------------CGCCG-CCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 43367 0.72 0.188688
Target:  5'- cACACCAaguaCugcucugauucguGCCGGCaGGCGGCGAuCCu -3'
miRNA:   3'- aUGUGGUg---G-------------UGGCCG-CCGCCGCUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.