miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18058 5' -55.8 NC_004680.1 + 3063 1.1 0.000787
Target:  5'- cCCGCUGCCGGAAAGCCUGAAUCGCCAu -3'
miRNA:   3'- -GGCGACGGCCUUUCGGACUUAGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 12925 0.85 0.04769
Target:  5'- gCGCUGCUGGGAAGCCUGGccaGCCAg -3'
miRNA:   3'- gGCGACGGCCUUUCGGACUuagCGGU- -5'
18058 5' -55.8 NC_004680.1 + 28383 0.78 0.156446
Target:  5'- gUGCUGCUGGguAGCCgaUGggUUGCCAc -3'
miRNA:   3'- gGCGACGGCCuuUCGG--ACuuAGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 11074 0.73 0.323501
Target:  5'- cCUGCUGCCGGgcGGCCUuGGUgGCg- -3'
miRNA:   3'- -GGCGACGGCCuuUCGGAcUUAgCGgu -5'
18058 5' -55.8 NC_004680.1 + 50491 0.72 0.364536
Target:  5'- gCCGCggGCCGGAAGGUC-GAccucAUCGCUu -3'
miRNA:   3'- -GGCGa-CGGCCUUUCGGaCU----UAGCGGu -5'
18058 5' -55.8 NC_004680.1 + 33543 0.7 0.446975
Target:  5'- aCGuCUGCCGGGAAGCCgu--UCGUUu -3'
miRNA:   3'- gGC-GACGGCCUUUCGGacuuAGCGGu -5'
18058 5' -55.8 NC_004680.1 + 17426 0.69 0.497014
Target:  5'- uCCGUUGCCGGAGugGGCUcaUGcggUGCCGu -3'
miRNA:   3'- -GGCGACGGCCUU--UCGG--ACuuaGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 24849 0.69 0.517731
Target:  5'- gCCGCUGcCCGGAGAuCCcgaggUGGAUgUGCCAc -3'
miRNA:   3'- -GGCGAC-GGCCUUUcGG-----ACUUA-GCGGU- -5'
18058 5' -55.8 NC_004680.1 + 12463 0.68 0.560121
Target:  5'- aCCGgaGCCGGAcccGGCagUGGAcccgCGCCAg -3'
miRNA:   3'- -GGCgaCGGCCUu--UCGg-ACUUa---GCGGU- -5'
18058 5' -55.8 NC_004680.1 + 3082 0.68 0.560121
Target:  5'- gCCGC-GCCGGGAGcGUUguggGAGUUGCCc -3'
miRNA:   3'- -GGCGaCGGCCUUU-CGGa---CUUAGCGGu -5'
18058 5' -55.8 NC_004680.1 + 5898 0.68 0.560121
Target:  5'- aCGUUGCUGcGgcGCUUGGAUUGCCGa -3'
miRNA:   3'- gGCGACGGCcUuuCGGACUUAGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 25503 0.68 0.592533
Target:  5'- aCCGCgugGCgGGGcucaAGGCCUGAGaaaccgacccCGCCAc -3'
miRNA:   3'- -GGCGa--CGgCCU----UUCGGACUUa---------GCGGU- -5'
18058 5' -55.8 NC_004680.1 + 14252 0.67 0.62524
Target:  5'- aCCGggGCUGGugucGCCUGAGUgaucaacgCGCCAc -3'
miRNA:   3'- -GGCgaCGGCCuuu-CGGACUUA--------GCGGU- -5'
18058 5' -55.8 NC_004680.1 + 47850 0.67 0.636167
Target:  5'- -gGCUGCggCGGuuGGCC-GggUCGCUg -3'
miRNA:   3'- ggCGACG--GCCuuUCGGaCuuAGCGGu -5'
18058 5' -55.8 NC_004680.1 + 25747 0.67 0.64709
Target:  5'- gCCGgUGCCGGu--GCCgUGGuuGUCGCa- -3'
miRNA:   3'- -GGCgACGGCCuuuCGG-ACU--UAGCGgu -5'
18058 5' -55.8 NC_004680.1 + 57702 0.67 0.657999
Target:  5'- aUCGUgucCCGcGAAAGCCUGAaccucAUCgGCCAa -3'
miRNA:   3'- -GGCGac-GGC-CUUUCGGACU-----UAG-CGGU- -5'
18058 5' -55.8 NC_004680.1 + 33113 0.67 0.657999
Target:  5'- gCCGCgacGUCGaaGAGGGCCgc-AUCGCCAc -3'
miRNA:   3'- -GGCGa--CGGC--CUUUCGGacuUAGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 45277 0.67 0.668885
Target:  5'- uUCGCUGaCGGguGGCUUGu-UCGUCAa -3'
miRNA:   3'- -GGCGACgGCCuuUCGGACuuAGCGGU- -5'
18058 5' -55.8 NC_004680.1 + 12471 0.66 0.679737
Target:  5'- -gGCUGCCGGugcgccacAAAGCCUGu-UCaCCGg -3'
miRNA:   3'- ggCGACGGCC--------UUUCGGACuuAGcGGU- -5'
18058 5' -55.8 NC_004680.1 + 44149 0.66 0.679737
Target:  5'- gCUGCUGCugCGGAggugaccgaauGAGCCUGAGUUucaaaCCAg -3'
miRNA:   3'- -GGCGACG--GCCU-----------UUCGGACUUAGc----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.