Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 3063 | 1.1 | 0.000787 |
Target: 5'- cCCGCUGCCGGAAAGCCUGAAUCGCCAu -3' miRNA: 3'- -GGCGACGGCCUUUCGGACUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 3082 | 0.68 | 0.560121 |
Target: 5'- gCCGC-GCCGGGAGcGUUguggGAGUUGCCc -3' miRNA: 3'- -GGCGaCGGCCUUU-CGGa---CUUAGCGGu -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 5898 | 0.68 | 0.560121 |
Target: 5'- aCGUUGCUGcGgcGCUUGGAUUGCCGa -3' miRNA: 3'- gGCGACGGCcUuuCGGACUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 11074 | 0.73 | 0.323501 |
Target: 5'- cCUGCUGCCGGgcGGCCUuGGUgGCg- -3' miRNA: 3'- -GGCGACGGCCuuUCGGAcUUAgCGgu -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 11107 | 0.66 | 0.697003 |
Target: 5'- aCGggGCCGGggGGCCggcuggcccgaugGGGagGCCGg -3' miRNA: 3'- gGCgaCGGCCuuUCGGa------------CUUagCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 11283 | 0.66 | 0.679737 |
Target: 5'- aCGCUGCCGuGuucucCgCUGAAUCGUCGu -3' miRNA: 3'- gGCGACGGC-Cuuuc-G-GACUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 12463 | 0.68 | 0.560121 |
Target: 5'- aCCGgaGCCGGAcccGGCagUGGAcccgCGCCAg -3' miRNA: 3'- -GGCgaCGGCCUu--UCGg-ACUUa---GCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 12471 | 0.66 | 0.679737 |
Target: 5'- -gGCUGCCGGugcgccacAAAGCCUGu-UCaCCGg -3' miRNA: 3'- ggCGACGGCC--------UUUCGGACuuAGcGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 12925 | 0.85 | 0.04769 |
Target: 5'- gCGCUGCUGGGAAGCCUGGccaGCCAg -3' miRNA: 3'- gGCGACGGCCUUUCGGACUuagCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 14252 | 0.67 | 0.62524 |
Target: 5'- aCCGggGCUGGugucGCCUGAGUgaucaacgCGCCAc -3' miRNA: 3'- -GGCgaCGGCCuuu-CGGACUUA--------GCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 14703 | 0.66 | 0.716235 |
Target: 5'- aCUGCUgcGCCGGuucGCCaggcgacuucgcggGGAUCGCCGc -3' miRNA: 3'- -GGCGA--CGGCCuuuCGGa-------------CUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 14933 | 0.66 | 0.679737 |
Target: 5'- gUCGCcgGaCUGGAGGGCC--GAUUGCCAu -3' miRNA: 3'- -GGCGa-C-GGCCUUUCGGacUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 17426 | 0.69 | 0.497014 |
Target: 5'- uCCGUUGCCGGAGugGGCUcaUGcggUGCCGu -3' miRNA: 3'- -GGCGACGGCCUU--UCGG--ACuuaGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 19166 | 0.66 | 0.690544 |
Target: 5'- aCGUcGCCGGAuAGCCcgccGUCGUCGa -3' miRNA: 3'- gGCGaCGGCCUuUCGGacu-UAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 22779 | 0.66 | 0.711982 |
Target: 5'- uCCGCc-CCGGGAgaaggcGGCC-GAGUCGUCGu -3' miRNA: 3'- -GGCGacGGCCUU------UCGGaCUUAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 24849 | 0.69 | 0.517731 |
Target: 5'- gCCGCUGcCCGGAGAuCCcgaggUGGAUgUGCCAc -3' miRNA: 3'- -GGCGAC-GGCCUUUcGG-----ACUUA-GCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 25503 | 0.68 | 0.592533 |
Target: 5'- aCCGCgugGCgGGGcucaAGGCCUGAGaaaccgacccCGCCAc -3' miRNA: 3'- -GGCGa--CGgCCU----UUCGGACUUa---------GCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 25747 | 0.67 | 0.64709 |
Target: 5'- gCCGgUGCCGGu--GCCgUGGuuGUCGCa- -3' miRNA: 3'- -GGCgACGGCCuuuCGG-ACU--UAGCGgu -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 28383 | 0.78 | 0.156446 |
Target: 5'- gUGCUGCUGGguAGCCgaUGggUUGCCAc -3' miRNA: 3'- gGCGACGGCCuuUCGG--ACuuAGCGGU- -5' |
|||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 30859 | 0.66 | 0.690544 |
Target: 5'- cCCGacuauCUGaCGGAGGGCCUGGugaAUCGUUAc -3' miRNA: 3'- -GGC-----GACgGCCUUUCGGACU---UAGCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home