Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18058 | 5' | -55.8 | NC_004680.1 | + | 12925 | 0.85 | 0.04769 |
Target: 5'- gCGCUGCUGGGAAGCCUGGccaGCCAg -3' miRNA: 3'- gGCGACGGCCUUUCGGACUuagCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 14252 | 0.67 | 0.62524 |
Target: 5'- aCCGggGCUGGugucGCCUGAGUgaucaacgCGCCAc -3' miRNA: 3'- -GGCgaCGGCCuuu-CGGACUUA--------GCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 25747 | 0.67 | 0.64709 |
Target: 5'- gCCGgUGCCGGu--GCCgUGGuuGUCGCa- -3' miRNA: 3'- -GGCgACGGCCuuuCGG-ACU--UAGCGgu -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 58747 | 0.66 | 0.679737 |
Target: 5'- -aGCUacggGuuGGGGAGCCgcGGUCGCCGg -3' miRNA: 3'- ggCGA----CggCCUUUCGGacUUAGCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 14933 | 0.66 | 0.679737 |
Target: 5'- gUCGCcgGaCUGGAGGGCC--GAUUGCCAu -3' miRNA: 3'- -GGCGa-C-GGCCUUUCGGacUUAGCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 11107 | 0.66 | 0.697003 |
Target: 5'- aCGggGCCGGggGGCCggcuggcccgaugGGGagGCCGg -3' miRNA: 3'- gGCgaCGGCCuuUCGGa------------CUUagCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 14703 | 0.66 | 0.716235 |
Target: 5'- aCUGCUgcGCCGGuucGCCaggcgacuucgcggGGAUCGCCGc -3' miRNA: 3'- -GGCGA--CGGCCuuuCGGa-------------CUUAGCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 44308 | 0.66 | 0.72259 |
Target: 5'- cCCGCUGCCGcuAGGCCcGGAcagUGCg- -3' miRNA: 3'- -GGCGACGGCcuUUCGGaCUUa--GCGgu -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 36518 | 0.66 | 0.726809 |
Target: 5'- uCCGCuUGCCGGGucuugaccgcaaaguAGGUCUG---CGCCGc -3' miRNA: 3'- -GGCG-ACGGCCU---------------UUCGGACuuaGCGGU- -5' |
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18058 | 5' | -55.8 | NC_004680.1 | + | 3063 | 1.1 | 0.000787 |
Target: 5'- cCCGCUGCCGGAAAGCCUGAAUCGCCAu -3' miRNA: 3'- -GGCGACGGCCUUUCGGACUUAGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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