Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18060 | 3' | -51.2 | NC_004680.1 | + | 3835 | 1.14 | 0.001439 |
Target: 5'- gCGAUGUACACCGAAGUCAUGGCAGCCa -3' miRNA: 3'- -GCUACAUGUGGCUUCAGUACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 18325 | 0.75 | 0.455274 |
Target: 5'- gGAUG-ACGCCGAGGUCAa-GCAGaCCg -3' miRNA: 3'- gCUACaUGUGGCUUCAGUacCGUC-GG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 3764 | 0.72 | 0.628434 |
Target: 5'- uCGGUGUACAUCgcaGAAGUCAcccaGCAGUCa -3' miRNA: 3'- -GCUACAUGUGG---CUUCAGUac--CGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 57764 | 0.71 | 0.706504 |
Target: 5'- aCGAUGUugacuGCGCCGAuGgauUGGCGGUCc -3' miRNA: 3'- -GCUACA-----UGUGGCUuCaguACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 7553 | 0.7 | 0.717448 |
Target: 5'- aGAUGUacugaACACCGAucUCGUaGCGGCCc -3' miRNA: 3'- gCUACA-----UGUGGCUucAGUAcCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 25112 | 0.7 | 0.728303 |
Target: 5'- aCGGUGgccUAUACgGAGGUgGUGGUGGCg -3' miRNA: 3'- -GCUAC---AUGUGgCUUCAgUACCGUCGg -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 47696 | 0.69 | 0.770604 |
Target: 5'- aGAUGUAUuCCGA--UCAUGGgAGCg -3' miRNA: 3'- gCUACAUGuGGCUucAGUACCgUCGg -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 33349 | 0.69 | 0.774717 |
Target: 5'- uCGAUGcguuucGCGCCGAggaucggguugauguGGUUguggAUGGCGGCCc -3' miRNA: 3'- -GCUACa-----UGUGGCU---------------UCAG----UACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 9969 | 0.69 | 0.780838 |
Target: 5'- cCGAUG-AUGCCu--GUCGcGGCGGCCg -3' miRNA: 3'- -GCUACaUGUGGcuuCAGUaCCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 42448 | 0.69 | 0.780838 |
Target: 5'- gGAaaUGCGCCGAGaUCGUGGCcuGCCc -3' miRNA: 3'- gCUacAUGUGGCUUcAGUACCGu-CGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 53964 | 0.69 | 0.800812 |
Target: 5'- aGAUGUgcgGCACaCGAGG-CAgGuGCAGCCc -3' miRNA: 3'- gCUACA---UGUG-GCUUCaGUaC-CGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 21938 | 0.69 | 0.800812 |
Target: 5'- uGAUGgugACGCCGAacgAGaCGUGGgacuCAGCCc -3' miRNA: 3'- gCUACa--UGUGGCU---UCaGUACC----GUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 15936 | 0.68 | 0.820052 |
Target: 5'- -----cACACCGGAGgguUGGCAGCa -3' miRNA: 3'- gcuacaUGUGGCUUCaguACCGUCGg -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 30347 | 0.68 | 0.820052 |
Target: 5'- uGGUGUcguacuGCGCUGgcGaUGUGGUAGCCa -3' miRNA: 3'- gCUACA------UGUGGCuuCaGUACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 23854 | 0.68 | 0.828447 |
Target: 5'- uCGGUG-ACAUCGGccaaaacguGGUCGUGGUugacgucGGCCu -3' miRNA: 3'- -GCUACaUGUGGCU---------UCAGUACCG-------UCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 9557 | 0.68 | 0.855985 |
Target: 5'- aGAUGgagGCgGCUGggGcgCGUGGCGGUUc -3' miRNA: 3'- gCUACa--UG-UGGCuuCa-GUACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 24897 | 0.67 | 0.864381 |
Target: 5'- gGcgGUGcCGCCGGcGGUgGUGGCGGUUc -3' miRNA: 3'- gCuaCAU-GUGGCU-UCAgUACCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 20728 | 0.67 | 0.872525 |
Target: 5'- uGggGUugACUGAAacGUCuUGGCcGCCg -3' miRNA: 3'- gCuaCAugUGGCUU--CAGuACCGuCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 28563 | 0.67 | 0.888029 |
Target: 5'- -cGUGUGgGCCGA--UCAcGGCGGCUc -3' miRNA: 3'- gcUACAUgUGGCUucAGUaCCGUCGG- -5' |
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18060 | 3' | -51.2 | NC_004680.1 | + | 20892 | 0.67 | 0.888029 |
Target: 5'- --cUGU-CACCGGAGUCGuaugaggcgUGGCuGUCa -3' miRNA: 3'- gcuACAuGUGGCUUCAGU---------ACCGuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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