miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18060 3' -51.2 NC_004680.1 + 1239 0.66 0.921962
Target:  5'- aCGuUGUACACguCGAcGgcugGGCAGCCg -3'
miRNA:   3'- -GCuACAUGUG--GCUuCaguaCCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 3713 0.66 0.909237
Target:  5'- uCGGUG-GCACCGGuuGUCcaaGCGGCCc -3'
miRNA:   3'- -GCUACaUGUGGCUu-CAGuacCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 3764 0.72 0.628434
Target:  5'- uCGGUGUACAUCgcaGAAGUCAcccaGCAGUCa -3'
miRNA:   3'- -GCUACAUGUGG---CUUCAGUac--CGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 3835 1.14 0.001439
Target:  5'- gCGAUGUACACCGAAGUCAUGGCAGCCa -3'
miRNA:   3'- -GCUACAUGUGGCUUCAGUACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 5319 0.67 0.89247
Target:  5'- cCGGUGUcggaaaucgcgucCGCCGAGGUC-UGcCGGCCa -3'
miRNA:   3'- -GCUACAu------------GUGGCUUCAGuACcGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 7553 0.7 0.717448
Target:  5'- aGAUGUacugaACACCGAucUCGUaGCGGCCc -3'
miRNA:   3'- gCUACA-----UGUGGCUucAGUAcCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 7667 0.66 0.921962
Target:  5'- ---cGUuCAUCGAg--CGUGGCGGCCu -3'
miRNA:   3'- gcuaCAuGUGGCUucaGUACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 9557 0.68 0.855985
Target:  5'- aGAUGgagGCgGCUGggGcgCGUGGCGGUUc -3'
miRNA:   3'- gCUACa--UG-UGGCuuCa-GUACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 9969 0.69 0.780838
Target:  5'- cCGAUG-AUGCCu--GUCGcGGCGGCCg -3'
miRNA:   3'- -GCUACaUGUGGcuuCAGUaCCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 11246 0.66 0.902447
Target:  5'- aCGAcGUugcCGCCGggGauUCcUGGCAuGCCg -3'
miRNA:   3'- -GCUaCAu--GUGGCuuC--AGuACCGU-CGG- -5'
18060 3' -51.2 NC_004680.1 + 15936 0.68 0.820052
Target:  5'- -----cACACCGGAGgguUGGCAGCa -3'
miRNA:   3'- gcuacaUGUGGCUUCaguACCGUCGg -5'
18060 3' -51.2 NC_004680.1 + 18325 0.75 0.455274
Target:  5'- gGAUG-ACGCCGAGGUCAa-GCAGaCCg -3'
miRNA:   3'- gCUACaUGUGGCUUCAGUacCGUC-GG- -5'
18060 3' -51.2 NC_004680.1 + 19631 0.66 0.927895
Target:  5'- uCGAaaccUGUugGCCGAGGcCcgGGCAcGUUc -3'
miRNA:   3'- -GCU----ACAugUGGCUUCaGuaCCGU-CGG- -5'
18060 3' -51.2 NC_004680.1 + 20156 0.66 0.933539
Target:  5'- uGAuuUGUuguCGCCGGAGgaUCA-GGCGGCg -3'
miRNA:   3'- gCU--ACAu--GUGGCUUC--AGUaCCGUCGg -5'
18060 3' -51.2 NC_004680.1 + 20728 0.67 0.872525
Target:  5'- uGggGUugACUGAAacGUCuUGGCcGCCg -3'
miRNA:   3'- gCuaCAugUGGCUU--CAGuACCGuCGG- -5'
18060 3' -51.2 NC_004680.1 + 20892 0.67 0.888029
Target:  5'- --cUGU-CACCGGAGUCGuaugaggcgUGGCuGUCa -3'
miRNA:   3'- gcuACAuGUGGCUUCAGU---------ACCGuCGG- -5'
18060 3' -51.2 NC_004680.1 + 21938 0.69 0.800812
Target:  5'- uGAUGgugACGCCGAacgAGaCGUGGgacuCAGCCc -3'
miRNA:   3'- gCUACa--UGUGGCU---UCaGUACC----GUCGG- -5'
18060 3' -51.2 NC_004680.1 + 22198 0.66 0.915743
Target:  5'- uCGAggccGCGCCGAAGUU-UGuGCGGUCg -3'
miRNA:   3'- -GCUaca-UGUGGCUUCAGuAC-CGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 23784 0.66 0.909237
Target:  5'- cCGAUGU-CACCGAuGUgAcGGCgAGCg -3'
miRNA:   3'- -GCUACAuGUGGCUuCAgUaCCG-UCGg -5'
18060 3' -51.2 NC_004680.1 + 23854 0.68 0.828447
Target:  5'- uCGGUG-ACAUCGGccaaaacguGGUCGUGGUugacgucGGCCu -3'
miRNA:   3'- -GCUACaUGUGGCU---------UCAGUACCG-------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.