Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18063 | 5' | -55 | NC_004680.1 | + | 4508 | 0.7 | 0.493212 |
Target: 5'- aGGACGCAGCCgccacgguugaGGAgccaACGCaagCUCCGa -3' miRNA: 3'- gCUUGCGUCGG-----------UCU----UGCGguaGAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 5629 | 1.09 | 0.001277 |
Target: 5'- aCGAACGCAGCCAGAACGCCAUCUCCGc -3' miRNA: 3'- -GCUUGCGUCGGUCUUGCGGUAGAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 8880 | 0.66 | 0.770735 |
Target: 5'- uGAcCGC-GCCGGGACGg-GUCUCCGc -3' miRNA: 3'- gCUuGCGuCGGUCUUGCggUAGAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 9309 | 0.65 | 0.780706 |
Target: 5'- gCGAACaGCAcgcGCCAccGCGCCAUUgaCCGg -3' miRNA: 3'- -GCUUG-CGU---CGGUcuUGCGGUAGa-GGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 9928 | 0.7 | 0.503505 |
Target: 5'- --cGCGCGGCCAGccaccGCGCCAgcCUUCGa -3' miRNA: 3'- gcuUGCGUCGGUCu----UGCGGUa-GAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 10624 | 0.75 | 0.269212 |
Target: 5'- aGAcuGCGCAGgaCCuguGGAAUGCCAUCUCCa -3' miRNA: 3'- gCU--UGCGUC--GG---UCUUGCGGUAGAGGc -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 10691 | 0.66 | 0.769729 |
Target: 5'- --uGCGCAGucucagcggcaucCCGGAACGCC-UCUuuGa -3' miRNA: 3'- gcuUGCGUC-------------GGUCUUGCGGuAGAggC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 11092 | 0.68 | 0.609349 |
Target: 5'- uGGugGCGGCCccggcgcccaagcAGAACGCCGcggCCGu -3' miRNA: 3'- gCUugCGUCGG-------------UCUUGCGGUagaGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 11793 | 0.67 | 0.697605 |
Target: 5'- uGAcCGCucuccCCGGGGCGCCGUCUgCa -3' miRNA: 3'- gCUuGCGuc---GGUCUUGCGGUAGAgGc -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 12466 | 0.7 | 0.545542 |
Target: 5'- cCGAugGCuGCCGGuGCGCCAcaaagccuguUCaCCGg -3' miRNA: 3'- -GCUugCGuCGGUCuUGCGGU----------AGaGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 12729 | 0.65 | 0.780706 |
Target: 5'- cCGGucuGCGCGGCCuGAccaGCGCCGggugCCa -3' miRNA: 3'- -GCU---UGCGUCGGuCU---UGCGGUaga-GGc -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 13343 | 0.69 | 0.556235 |
Target: 5'- aGAGCGCAucaauGUUGGuGAUGCCGUCUUCGg -3' miRNA: 3'- gCUUGCGU-----CGGUC-UUGCGGUAGAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 16813 | 0.7 | 0.534915 |
Target: 5'- uCGAACGUGGCCGGAAcacccgguuCGCCcuUCUCg- -3' miRNA: 3'- -GCUUGCGUCGGUCUU---------GCGGu-AGAGgc -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 17566 | 0.7 | 0.534915 |
Target: 5'- aCGGACGCuGCaCuGcAACGCCGacugCUCCGg -3' miRNA: 3'- -GCUUGCGuCG-GuC-UUGCGGUa---GAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 22947 | 0.68 | 0.665097 |
Target: 5'- gGAACGUGGCCGcGAugGCUGUUcCCc -3' miRNA: 3'- gCUUGCGUCGGU-CUugCGGUAGaGGc -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 33572 | 0.7 | 0.513891 |
Target: 5'- gGAACGCGGUguGGaugaugugcuGCGCCAcgUCUgCCGg -3' miRNA: 3'- gCUUGCGUCGguCU----------UGCGGU--AGA-GGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 36596 | 0.67 | 0.71898 |
Target: 5'- gCGAGCGguGUCGGcgaa-CAUCUCCGu -3' miRNA: 3'- -GCUUGCguCGGUCuugcgGUAGAGGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 39635 | 0.67 | 0.71898 |
Target: 5'- gGAGCGCcGCaCGGAGCGCCGcagggagcgCCGc -3' miRNA: 3'- gCUUGCGuCG-GUCUUGCGGUaga------GGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 39839 | 0.67 | 0.697605 |
Target: 5'- aGAGCGCcGCaCGGAGCGCCGcagggagcgCCGc -3' miRNA: 3'- gCUUGCGuCG-GUCUUGCGGUaga------GGC- -5' |
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18063 | 5' | -55 | NC_004680.1 | + | 43547 | 0.68 | 0.610442 |
Target: 5'- uCGAccaGgGCGGCCGGGAacgcUGCCGcugCUCCGa -3' miRNA: 3'- -GCU---UgCGUCGGUCUU----GCGGUa--GAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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