miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 5' -50.3 NC_004680.1 + 40663 0.66 0.95973
Target:  5'- ---gUGGCGugGGGCUCUGcGCAcgUCGa -3'
miRNA:   3'- cccaAUUGCugCUCGAGGU-CGUa-AGC- -5'
18067 5' -50.3 NC_004680.1 + 36609 0.66 0.95973
Target:  5'- ----cAGCGACGAGCUugCgAGCGgugUCGg -3'
miRNA:   3'- cccaaUUGCUGCUCGA--GgUCGUa--AGC- -5'
18067 5' -50.3 NC_004680.1 + 32716 0.66 0.955638
Target:  5'- gGGGUguACGGgGAGUaccagCCAGCAgaCGu -3'
miRNA:   3'- -CCCAauUGCUgCUCGa----GGUCGUaaGC- -5'
18067 5' -50.3 NC_004680.1 + 39392 0.66 0.955638
Target:  5'- uGGGUUGGCaGACGguaGGCaccgCUGGCGuUUCGg -3'
miRNA:   3'- -CCCAAUUG-CUGC---UCGa---GGUCGU-AAGC- -5'
18067 5' -50.3 NC_004680.1 + 29066 0.66 0.946628
Target:  5'- cGGUUugGGCGaACGuGCgggCCGcGCGUUCGg -3'
miRNA:   3'- cCCAA--UUGC-UGCuCGa--GGU-CGUAAGC- -5'
18067 5' -50.3 NC_004680.1 + 40478 0.66 0.943706
Target:  5'- cGGGcucugcgcacgucgUGGCGugGGGCUCUGcGCAcgUCGa -3'
miRNA:   3'- -CCCa-------------AUUGCugCUCGAGGU-CGUa-AGC- -5'
18067 5' -50.3 NC_004680.1 + 25819 0.66 0.941701
Target:  5'- aGGGUUcAUGACgGGGUUCCAGUu---- -3'
miRNA:   3'- -CCCAAuUGCUG-CUCGAGGUCGuaagc -5'
18067 5' -50.3 NC_004680.1 + 1118 0.66 0.936488
Target:  5'- uGGUgcGCgGACGAcGUUUCAGCAUuUCGa -3'
miRNA:   3'- cCCAauUG-CUGCU-CGAGGUCGUA-AGC- -5'
18067 5' -50.3 NC_004680.1 + 33676 0.66 0.936488
Target:  5'- gGGGUUGuCGACGuAGggCCAGCGc--- -3'
miRNA:   3'- -CCCAAUuGCUGC-UCgaGGUCGUaagc -5'
18067 5' -50.3 NC_004680.1 + 40525 0.67 0.931551
Target:  5'- uGGGgcucugcacgcgucgUGGCGugGGGCUCUGcGCAcgUCGu -3'
miRNA:   3'- -CCCa--------------AUUGCugCUCGAGGU-CGUa-AGC- -5'
18067 5' -50.3 NC_004680.1 + 40573 0.67 0.931551
Target:  5'- uGGGgcucugcgcgcgucgUGGCGugGGGCUCUGcGCAcgUCGu -3'
miRNA:   3'- -CCCa--------------AUUGCugCUCGAGGU-CGUa-AGC- -5'
18067 5' -50.3 NC_004680.1 + 9408 0.67 0.930988
Target:  5'- cGGUUGagGCGcACGAGUUgCAGCGUg-- -3'
miRNA:   3'- cCCAAU--UGC-UGCUCGAgGUCGUAagc -5'
18067 5' -50.3 NC_004680.1 + 33326 0.67 0.91912
Target:  5'- cGGGUUGAUGugGuuguggauggcGGC-CCGGUAgUCGu -3'
miRNA:   3'- -CCCAAUUGCugC-----------UCGaGGUCGUaAGC- -5'
18067 5' -50.3 NC_004680.1 + 42286 0.67 0.91912
Target:  5'- cGGUgcgGugGugGcAGC-CCAGCuGUUCGg -3'
miRNA:   3'- cCCAa--UugCugC-UCGaGGUCG-UAAGC- -5'
18067 5' -50.3 NC_004680.1 + 22169 0.67 0.912754
Target:  5'- cGGGUUGucguucACGcCGAGC-CUGGgGUUCGa -3'
miRNA:   3'- -CCCAAU------UGCuGCUCGaGGUCgUAAGC- -5'
18067 5' -50.3 NC_004680.1 + 59198 0.68 0.899164
Target:  5'- gGGGUUGuauguggucgGCGugGAGUucgCCGGUGUUgGg -3'
miRNA:   3'- -CCCAAU----------UGCugCUCGa--GGUCGUAAgC- -5'
18067 5' -50.3 NC_004680.1 + 1533 0.68 0.884454
Target:  5'- cGG-UGGCGuaaguCGGGCUCgcaGGCGUUCGa -3'
miRNA:   3'- cCCaAUUGCu----GCUCGAGg--UCGUAAGC- -5'
18067 5' -50.3 NC_004680.1 + 27042 0.7 0.795928
Target:  5'- aGGUUGGcCGGCGAGUucgcgcaacgagUCCAGCAaUCc -3'
miRNA:   3'- cCCAAUU-GCUGCUCG------------AGGUCGUaAGc -5'
18067 5' -50.3 NC_004680.1 + 32603 0.71 0.744326
Target:  5'- -cGUUGGCGACuauGUgauUCCAGCGUUCGa -3'
miRNA:   3'- ccCAAUUGCUGcu-CG---AGGUCGUAAGC- -5'
18067 5' -50.3 NC_004680.1 + 35338 0.72 0.667438
Target:  5'- cGGGUUcccacuGCaGugGAGCaUCgAGCAUUCGa -3'
miRNA:   3'- -CCCAAu-----UG-CugCUCG-AGgUCGUAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.