miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18072 3' -56.1 NC_004680.1 + 8508 1.11 0.000808
Target:  5'- cCCAAACCAACCCACCCGGCAGGACGAu -3'
miRNA:   3'- -GGUUUGGUUGGGUGGGCCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 8312 0.77 0.172826
Target:  5'- --cAugCGGCCCgACCCGGCGGGAaCGAu -3'
miRNA:   3'- gguUugGUUGGG-UGGGCCGUCCU-GCU- -5'
18072 3' -56.1 NC_004680.1 + 12834 0.77 0.18226
Target:  5'- gCCAGAuCCGAUCCGCCCgugGGCAGGAaCGu -3'
miRNA:   3'- -GGUUU-GGUUGGGUGGG---CCGUCCU-GCu -5'
18072 3' -56.1 NC_004680.1 + 35179 0.76 0.2025
Target:  5'- gCCGAGCCAACCUcgGgCCGGCgaaacaguuGGGGCGGa -3'
miRNA:   3'- -GGUUUGGUUGGG--UgGGCCG---------UCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 10308 0.76 0.224664
Target:  5'- uCCAuGCUGACCUugCCGGUGGcGGCGAu -3'
miRNA:   3'- -GGUuUGGUUGGGugGGCCGUC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 21859 0.75 0.230518
Target:  5'- gCCAuGCCAGCCCACUuauuCGGCcGcGACGAg -3'
miRNA:   3'- -GGUuUGGUUGGGUGG----GCCGuC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 28999 0.75 0.230518
Target:  5'- cCCAAACCGcgaucGCCaCACUCGGCGcGGGCGc -3'
miRNA:   3'- -GGUUUGGU-----UGG-GUGGGCCGU-CCUGCu -5'
18072 3' -56.1 NC_004680.1 + 41625 0.75 0.242612
Target:  5'- aCGAAgaAAgCCACCUGGUAGGGCGAc -3'
miRNA:   3'- gGUUUggUUgGGUGGGCCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 9866 0.75 0.261737
Target:  5'- -aAAACCGGCCCGCCacaGGCAacGACGAc -3'
miRNA:   3'- ggUUUGGUUGGGUGGg--CCGUc-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 8447 0.74 0.282071
Target:  5'- -gGGGCUGgcACCCACCCGGCAGGcACc- -3'
miRNA:   3'- ggUUUGGU--UGGGUGGGCCGUCC-UGcu -5'
18072 3' -56.1 NC_004680.1 + 15787 0.73 0.339126
Target:  5'- uUCAAGCCGAUCaucaagcagguuCCCGGCAuGGACGGc -3'
miRNA:   3'- -GGUUUGGUUGGgu----------GGGCCGU-CCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 12899 0.72 0.384501
Target:  5'- gCCAGGuCCAGCCCAa---GCAGGGCGAc -3'
miRNA:   3'- -GGUUU-GGUUGGGUgggcCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 36149 0.71 0.411389
Target:  5'- gCCGGACgCAuCCCauGCCC-GCAGGGCGGc -3'
miRNA:   3'- -GGUUUG-GUuGGG--UGGGcCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 29702 0.71 0.411389
Target:  5'- aCCGGgcACCAACCCaaucacauGCUgGGCAGGuGCGGg -3'
miRNA:   3'- -GGUU--UGGUUGGG--------UGGgCCGUCC-UGCU- -5'
18072 3' -56.1 NC_004680.1 + 34583 0.71 0.420607
Target:  5'- cCCAc-CCAGCUCcCCCGGCugcacguGGGCGAu -3'
miRNA:   3'- -GGUuuGGUUGGGuGGGCCGu------CCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 23564 0.71 0.429949
Target:  5'- cCgGGGCCuGCCC-CUCGGCAGGAUc- -3'
miRNA:   3'- -GgUUUGGuUGGGuGGGCCGUCCUGcu -5'
18072 3' -56.1 NC_004680.1 + 34258 0.7 0.468492
Target:  5'- gCCcuGCCGagggauucACCaucCCCGGCAGGGCGc -3'
miRNA:   3'- -GGuuUGGU--------UGGgu-GGGCCGUCCUGCu -5'
18072 3' -56.1 NC_004680.1 + 47567 0.7 0.478404
Target:  5'- uCCGAgGCCAGCCCAUCCG--AGGACc- -3'
miRNA:   3'- -GGUU-UGGUUGGGUGGGCcgUCCUGcu -5'
18072 3' -56.1 NC_004680.1 + 25144 0.7 0.482397
Target:  5'- gCCAGGCCAACgCCACCaccaccuugucgUGGCGcagcggaaaaggugcGGACGGc -3'
miRNA:   3'- -GGUUUGGUUG-GGUGG------------GCCGU---------------CCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 35750 0.7 0.496499
Target:  5'- cCCGAACCAAaagcgucgccgaCCGCCCGcuCAGGACu- -3'
miRNA:   3'- -GGUUUGGUUg-----------GGUGGGCc-GUCCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.