miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18072 3' -56.1 NC_004680.1 + 287 0.68 0.571568
Target:  5'- gCCAca-CAACaCCAUCCGGCAGGucugGCGc -3'
miRNA:   3'- -GGUuugGUUG-GGUGGGCCGUCC----UGCu -5'
18072 3' -56.1 NC_004680.1 + 1918 0.69 0.539841
Target:  5'- -gGAACCGGCCCGCCCacGCGGcGAucguCGAa -3'
miRNA:   3'- ggUUUGGUUGGGUGGGc-CGUC-CU----GCU- -5'
18072 3' -56.1 NC_004680.1 + 2968 0.68 0.613418
Target:  5'- cCCAuGCCAucaggguucugguACaCCACcaCCGGCGGcGGCGAa -3'
miRNA:   3'- -GGUuUGGU-------------UG-GGUG--GGCCGUC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 8312 0.77 0.172826
Target:  5'- --cAugCGGCCCgACCCGGCGGGAaCGAu -3'
miRNA:   3'- gguUugGUUGGG-UGGGCCGUCCU-GCU- -5'
18072 3' -56.1 NC_004680.1 + 8442 0.68 0.592969
Target:  5'- cCCGGGCCAcccAUCCACacauagaaguagCCGGgaacCAGGGCGAu -3'
miRNA:   3'- -GGUUUGGU---UGGGUG------------GGCC----GUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 8447 0.74 0.282071
Target:  5'- -gGGGCUGgcACCCACCCGGCAGGcACc- -3'
miRNA:   3'- ggUUUGGU--UGGGUGGGCCGUCC-UGcu -5'
18072 3' -56.1 NC_004680.1 + 8508 1.11 0.000808
Target:  5'- cCCAAACCAACCCACCCGGCAGGACGAu -3'
miRNA:   3'- -GGUUUGGUUGGGUGGGCCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 9866 0.75 0.261737
Target:  5'- -aAAACCGGCCCGCCacaGGCAacGACGAc -3'
miRNA:   3'- ggUUUGGUUGGGUGGg--CCGUc-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 10308 0.76 0.224664
Target:  5'- uCCAuGCUGACCUugCCGGUGGcGGCGAu -3'
miRNA:   3'- -GGUuUGGUUGGGugGGCCGUC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 10909 0.69 0.550357
Target:  5'- -aGGACCAGCCCGa-CGGCgAGGACc- -3'
miRNA:   3'- ggUUUGGUUGGGUggGCCG-UCCUGcu -5'
18072 3' -56.1 NC_004680.1 + 11026 0.67 0.636083
Target:  5'- gCC-AGCCGGCCC-CCCGGCcccGuCGAu -3'
miRNA:   3'- -GGuUUGGUUGGGuGGGCCGuc-CuGCU- -5'
18072 3' -56.1 NC_004680.1 + 11166 0.67 0.625287
Target:  5'- gCCGGggccGCCAccaaGgCCGCCCGGCAGcaggaugccaucGACGGc -3'
miRNA:   3'- -GGUU----UGGU----UgGGUGGGCCGUC------------CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 11847 0.66 0.689818
Target:  5'- aCAcACCGGCCgCA-CCGGCAG-ACGGg -3'
miRNA:   3'- gGUuUGGUUGG-GUgGGCCGUCcUGCU- -5'
18072 3' -56.1 NC_004680.1 + 12265 0.66 0.7215
Target:  5'- aCGAACUGGCCCGCCCaaGGCGcuGGuguUGGu -3'
miRNA:   3'- gGUUUGGUUGGGUGGG--CCGU--CCu--GCU- -5'
18072 3' -56.1 NC_004680.1 + 12428 0.67 0.668413
Target:  5'- aCCcAGCCccgcuGCCCACcaCCGGUGGuGGCGGc -3'
miRNA:   3'- -GGuUUGGu----UGGGUG--GGCCGUC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 12834 0.77 0.18226
Target:  5'- gCCAGAuCCGAUCCGCCCgugGGCAGGAaCGu -3'
miRNA:   3'- -GGUUU-GGUUGGGUGGG---CCGUCCU-GCu -5'
18072 3' -56.1 NC_004680.1 + 12899 0.72 0.384501
Target:  5'- gCCAGGuCCAGCCCAa---GCAGGGCGAc -3'
miRNA:   3'- -GGUUU-GGUUGGGUgggcCGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 13091 0.68 0.571568
Target:  5'- uCUuAGCCAcuuACCCuCCCGGCAuGACGu -3'
miRNA:   3'- -GGuUUGGU---UGGGuGGGCCGUcCUGCu -5'
18072 3' -56.1 NC_004680.1 + 15520 0.67 0.679137
Target:  5'- aCAGA-CAGCCCAuCCCGcGaCAGGGCu- -3'
miRNA:   3'- gGUUUgGUUGGGU-GGGC-C-GUCCUGcu -5'
18072 3' -56.1 NC_004680.1 + 15726 0.66 0.700446
Target:  5'- uCCAggUUcGCCCACCUGuCAGGcuGCGGa -3'
miRNA:   3'- -GGUuuGGuUGGGUGGGCcGUCC--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.