Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18073 | 3' | -58.1 | NC_004680.1 | + | 34558 | 0.72 | 0.295004 |
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Target: 5'- uGGGCGAUCgucaGCAUCgccgacuacCGCGGCGGCg -3' miRNA: 3'- -CUUGCUAGg---CGUGGagu------GCGCCGCCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 3705 | 0.72 | 0.28791 |
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Target: 5'- cGAGCaGUCUGCGCCUCAguucaGCGGUcGCa -3' miRNA: 3'- -CUUGcUAGGCGUGGAGUg----CGCCGcCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 5783 | 0.72 | 0.28095 |
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Target: 5'- uGAcCGuAUCCGCGCUcugCACGUguacGGCGGCa -3' miRNA: 3'- -CUuGC-UAGGCGUGGa--GUGCG----CCGCCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 16647 | 0.72 | 0.274124 |
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Target: 5'- --uCGAUCCGaCugCUgGCGCGGCGa- -3' miRNA: 3'- cuuGCUAGGC-GugGAgUGCGCCGCcg -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 29889 | 0.72 | 0.260873 |
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Target: 5'- cGGCGAUgCGCACCUgGCGCaGGUcGCu -3' miRNA: 3'- cUUGCUAgGCGUGGAgUGCG-CCGcCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 18433 | 0.73 | 0.254445 |
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Target: 5'- cGGugGuGUCCGCua-UC-CGCGGCGGCg -3' miRNA: 3'- -CUugC-UAGGCGuggAGuGCGCCGCCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 42028 | 0.73 | 0.248148 |
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Target: 5'- ---aGAUCUGCACg-CAgUGCGGCGGCg -3' miRNA: 3'- cuugCUAGGCGUGgaGU-GCGCCGCCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 41685 | 0.75 | 0.177555 |
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Target: 5'- -cGCGAUCUGCACC-CACaaGGaCGGCg -3' miRNA: 3'- cuUGCUAGGCGUGGaGUGcgCC-GCCG- -5' |
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| 18073 | 3' | -58.1 | NC_004680.1 | + | 8944 | 1.11 | 0.000424 |
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Target: 5'- uGAACGAUCCGCACCUCACGCGGCGGCg -3' miRNA: 3'- -CUUGCUAGGCGUGGAGUGCGCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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