miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 5' -52.7 NC_004680.1 + 59084 0.66 0.869599
Target:  5'- cUUugCGUCCUUGG----UGGuuGCCCc -3'
miRNA:   3'- -AAugGCAGGAACUuuauGCCgcCGGG- -5'
18073 5' -52.7 NC_004680.1 + 7664 0.66 0.861387
Target:  5'- -aGCCGUUCaucGAGcg-UGGCGGCCUg -3'
miRNA:   3'- aaUGGCAGGaa-CUUuauGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 13717 0.66 0.852927
Target:  5'- -cGCCGgcaCCUUcGuAGUACaGCGGCCa -3'
miRNA:   3'- aaUGGCa--GGAA-CuUUAUGcCGCCGGg -5'
18073 5' -52.7 NC_004680.1 + 40873 0.66 0.852927
Target:  5'- -gGCCGggUCggUGAGAgcaACGGCGGUCa -3'
miRNA:   3'- aaUGGC--AGgaACUUUa--UGCCGCCGGg -5'
18073 5' -52.7 NC_004680.1 + 42635 0.66 0.849476
Target:  5'- -aACaUGUCCUggccca--GGCGGCCCg -3'
miRNA:   3'- aaUG-GCAGGAacuuuaugCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 21873 0.66 0.844228
Target:  5'- -cACCaucacUCCUgaggUGGGAuuccgcUACGGCGGUCCg -3'
miRNA:   3'- aaUGGc----AGGA----ACUUU------AUGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 58753 0.66 0.832576
Target:  5'- -aGCCGaccacCCUaggccugauguggaUGAAAUACGGCGacgacccaacaGCCCa -3'
miRNA:   3'- aaUGGCa----GGA--------------ACUUUAUGCCGC-----------CGGG- -5'
18073 5' -52.7 NC_004680.1 + 13956 0.67 0.798453
Target:  5'- gUUACCGUCCcagucgccguUGCugucGCGGCCCa -3'
miRNA:   3'- -AAUGGCAGGaacuuu----AUGc---CGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 7852 0.67 0.79747
Target:  5'- cUUGCCGUCCUgcgcgaACGGCGaCCa -3'
miRNA:   3'- -AAUGGCAGGAacuuuaUGCCGCcGGg -5'
18073 5' -52.7 NC_004680.1 + 57739 0.67 0.777439
Target:  5'- -gGCgGUCCUUGcGGAuuugauuagcUugGGCGGCUg -3'
miRNA:   3'- aaUGgCAGGAAC-UUU----------AugCCGCCGGg -5'
18073 5' -52.7 NC_004680.1 + 17093 0.67 0.777439
Target:  5'- -aGCCGUUCgau-----UGGCGGCCCc -3'
miRNA:   3'- aaUGGCAGGaacuuuauGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 47220 0.67 0.777439
Target:  5'- gUACgGUCCgg-----GCGGUGGCUCg -3'
miRNA:   3'- aAUGgCAGGaacuuuaUGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 12964 0.68 0.724848
Target:  5'- -gACCuggCCUUGG---GCGGCGGCUUg -3'
miRNA:   3'- aaUGGca-GGAACUuuaUGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 20105 0.68 0.724848
Target:  5'- -aACCGUUCgucccAUACGGCGGCa- -3'
miRNA:   3'- aaUGGCAGGaacuuUAUGCCGCCGgg -5'
18073 5' -52.7 NC_004680.1 + 43795 0.7 0.602779
Target:  5'- -cGCgGUCCagGAAcugcaACGGUGGCCCc -3'
miRNA:   3'- aaUGgCAGGaaCUUua---UGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 25431 0.72 0.525783
Target:  5'- -cGCCGagCUUGAcgccGAacUGGCGGCCCu -3'
miRNA:   3'- aaUGGCagGAACU----UUauGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 12447 0.73 0.473109
Target:  5'- -cACCGg---UGGug-GCGGCGGCCCg -3'
miRNA:   3'- aaUGGCaggaACUuuaUGCCGCCGGG- -5'
18073 5' -52.7 NC_004680.1 + 12685 0.74 0.423224
Target:  5'- -aACCGggCCaucGAGUACGGCGGCCa -3'
miRNA:   3'- aaUGGCa-GGaacUUUAUGCCGCCGGg -5'
18073 5' -52.7 NC_004680.1 + 43661 0.74 0.41363
Target:  5'- -aGCCGcCCUUGAugacgcGCGGUGuGCCCu -3'
miRNA:   3'- aaUGGCaGGAACUuua---UGCCGC-CGGG- -5'
18073 5' -52.7 NC_004680.1 + 11078 0.75 0.341925
Target:  5'- cUGCCGggcggCCUUGG----UGGCGGCCCc -3'
miRNA:   3'- aAUGGCa----GGAACUuuauGCCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.