miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18074 3' -45.7 NC_004680.1 + 13826 0.66 0.998574
Target:  5'- uCGAAGUCCuuGUACGGgccgcacaccacUUCGCGggUu -3'
miRNA:   3'- -GCUUUAGGugUAUGUU------------GAGCGCuuGu -5'
18074 3' -45.7 NC_004680.1 + 59427 0.66 0.997864
Target:  5'- gGggGuguuUCCGCAgguCAgagGCUUGCGGGCGu -3'
miRNA:   3'- gCuuU----AGGUGUau-GU---UGAGCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 24275 0.66 0.997864
Target:  5'- ---cAUCCACAUGCcGgUCGCGGu-- -3'
miRNA:   3'- gcuuUAGGUGUAUGuUgAGCGCUugu -5'
18074 3' -45.7 NC_004680.1 + 26678 0.66 0.997412
Target:  5'- cCGAAGgcCCGC-UACGcACcCGCGAACAg -3'
miRNA:   3'- -GCUUUa-GGUGuAUGU-UGaGCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 12209 0.66 0.997412
Target:  5'- ---cGUCCGCG-GCAGCguucccCGCGAGCGg -3'
miRNA:   3'- gcuuUAGGUGUaUGUUGa-----GCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 8200 0.67 0.996265
Target:  5'- -cGAAUCCGCGUcCAGCa-GCGGACc -3'
miRNA:   3'- gcUUUAGGUGUAuGUUGagCGCUUGu -5'
18074 3' -45.7 NC_004680.1 + 33979 0.67 0.995551
Target:  5'- gCGGAGUuucugcaucgCCACAUACAACg-GCGGcaACAa -3'
miRNA:   3'- -GCUUUA----------GGUGUAUGUUGagCGCU--UGU- -5'
18074 3' -45.7 NC_004680.1 + 32463 0.67 0.99379
Target:  5'- aUGggGUCCACAUGCGuucccacacguGCUCGaauucGGCGu -3'
miRNA:   3'- -GCuuUAGGUGUAUGU-----------UGAGCgc---UUGU- -5'
18074 3' -45.7 NC_004680.1 + 54938 0.68 0.99272
Target:  5'- cCGGAGUCgugGCGUAuCAACUUGCaGGACGg -3'
miRNA:   3'- -GCUUUAGg--UGUAU-GUUGAGCG-CUUGU- -5'
18074 3' -45.7 NC_004680.1 + 49742 0.68 0.991508
Target:  5'- aCGGA--CCgACGUGCGACgaaGCGAACGc -3'
miRNA:   3'- -GCUUuaGG-UGUAUGUUGag-CGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 20932 0.68 0.990142
Target:  5'- gGAAGcacUCCACAgggUGgGACcagUCGCGAACGg -3'
miRNA:   3'- gCUUU---AGGUGU---AUgUUG---AGCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 5481 0.68 0.990142
Target:  5'- cCGuuGUCCACcaGCAugUCaGCGAugAa -3'
miRNA:   3'- -GCuuUAGGUGuaUGUugAG-CGCUugU- -5'
18074 3' -45.7 NC_004680.1 + 34033 0.69 0.984995
Target:  5'- cCGAGucguugCCGCcgcACAACUCGCGGcACAc -3'
miRNA:   3'- -GCUUua----GGUGua-UGUUGAGCGCU-UGU- -5'
18074 3' -45.7 NC_004680.1 + 36619 0.69 0.982889
Target:  5'- uCGGAcUCgACAgcgACgAGCUUGCGAGCGg -3'
miRNA:   3'- -GCUUuAGgUGUa--UG-UUGAGCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 6992 0.69 0.980567
Target:  5'- gCGAcuGAUCCGCAggcGCAuCUCGUGGAg- -3'
miRNA:   3'- -GCU--UUAGGUGUa--UGUuGAGCGCUUgu -5'
18074 3' -45.7 NC_004680.1 + 28956 0.69 0.978018
Target:  5'- aCGuuguAGUCCACGUGCGGgccggugcguUUCGCGAAgAa -3'
miRNA:   3'- -GCu---UUAGGUGUAUGUU----------GAGCGCUUgU- -5'
18074 3' -45.7 NC_004680.1 + 11448 0.7 0.972192
Target:  5'- cCGAGAUgCGCAUGuCGGaugCGCGGGCGa -3'
miRNA:   3'- -GCUUUAgGUGUAU-GUUga-GCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 42386 0.7 0.961083
Target:  5'- ----uUCCGCggccaggGUugGACUCGUGAGCAg -3'
miRNA:   3'- gcuuuAGGUG-------UAugUUGAGCGCUUGU- -5'
18074 3' -45.7 NC_004680.1 + 54385 0.71 0.950133
Target:  5'- cCGGGAUCCcgauguggacccacgAacuCAUGCAGCUCGCGGAg- -3'
miRNA:   3'- -GCUUUAGG---------------U---GUAUGUUGAGCGCUUgu -5'
18074 3' -45.7 NC_004680.1 + 41655 0.72 0.926253
Target:  5'- aGAAGUCCACAccaGCGACUgGCGuucccGCGc -3'
miRNA:   3'- gCUUUAGGUGUa--UGUUGAgCGCu----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.