miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 5' -52.2 NC_004680.1 + 9525 0.66 0.908919
Target:  5'- --cCGUCaccaGC-CGAacagaucggccUCAACCUCACGCu -3'
miRNA:   3'- gaaGCAG----CGuGCU-----------AGUUGGAGUGCGc -5'
18077 5' -52.2 NC_004680.1 + 8966 0.66 0.906936
Target:  5'- -gUUGUCcauGCccaacacgaccugaACGAUCcgcACCUCACGCGg -3'
miRNA:   3'- gaAGCAG---CG--------------UGCUAGu--UGGAGUGCGC- -5'
18077 5' -52.2 NC_004680.1 + 41207 0.66 0.902211
Target:  5'- uUUCGcCGUAcCGGUCAACCUcCACa-- -3'
miRNA:   3'- gAAGCaGCGU-GCUAGUUGGA-GUGcgc -5'
18077 5' -52.2 NC_004680.1 + 10118 0.66 0.895229
Target:  5'- -gUCGUCGaaUACGggUGACCUCAaGCGc -3'
miRNA:   3'- gaAGCAGC--GUGCuaGUUGGAGUgCGC- -5'
18077 5' -52.2 NC_004680.1 + 39995 0.66 0.887979
Target:  5'- -cUCGccacCGUGCGAUCGACUUC-CGUGu -3'
miRNA:   3'- gaAGCa---GCGUGCUAGUUGGAGuGCGC- -5'
18077 5' -52.2 NC_004680.1 + 31568 0.66 0.887979
Target:  5'- --aCGUgCGCAgGAgccgUCAcuACCUUGCGCGg -3'
miRNA:   3'- gaaGCA-GCGUgCU----AGU--UGGAGUGCGC- -5'
18077 5' -52.2 NC_004680.1 + 48694 0.66 0.880464
Target:  5'- aUUCGUUGUACGAggcuUCGACgaUCACGg- -3'
miRNA:   3'- gAAGCAGCGUGCU----AGUUGg-AGUGCgc -5'
18077 5' -52.2 NC_004680.1 + 18283 0.67 0.856394
Target:  5'- gUUCGUCGuCACGGaaGACgCUaCugGCGg -3'
miRNA:   3'- gAAGCAGC-GUGCUagUUG-GA-GugCGC- -5'
18077 5' -52.2 NC_004680.1 + 39086 0.67 0.853866
Target:  5'- gCUUCGgcgauaCGCAUcGUCAagucauccucggacACCUCACGCu -3'
miRNA:   3'- -GAAGCa-----GCGUGcUAGU--------------UGGAGUGCGc -5'
18077 5' -52.2 NC_004680.1 + 52232 0.68 0.805934
Target:  5'- ---aGUUGCGCGAUCAccuuuucacguuccgGCCgggUCACGCu -3'
miRNA:   3'- gaagCAGCGUGCUAGU---------------UGG---AGUGCGc -5'
18077 5' -52.2 NC_004680.1 + 7377 0.7 0.709283
Target:  5'- -gUUGUUGCGCGuAUCGACUaUGCGCGu -3'
miRNA:   3'- gaAGCAGCGUGC-UAGUUGGaGUGCGC- -5'
18077 5' -52.2 NC_004680.1 + 11832 0.71 0.621278
Target:  5'- ---aGUCGC-CGcgCGACUUCGCGCa -3'
miRNA:   3'- gaagCAGCGuGCuaGUUGGAGUGCGc -5'
18077 5' -52.2 NC_004680.1 + 49821 0.72 0.588149
Target:  5'- gCUUCGUCGCACGucgGUCcgucggguucgGACCaaGCGCGu -3'
miRNA:   3'- -GAAGCAGCGUGC---UAG-----------UUGGagUGCGC- -5'
18077 5' -52.2 NC_004680.1 + 9749 1.1 0.002215
Target:  5'- cCUUCGUCGCACGAUCAACCUCACGCGa -3'
miRNA:   3'- -GAAGCAGCGUGCUAGUUGGAGUGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.