Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18082 | 5' | -53.9 | NC_004680.1 | + | 14815 | 0.66 | 0.782553 |
Target: 5'- -cGGGCCGg---GGCUUGCcACU-CCa -3' miRNA: 3'- uaUCCGGCuuuaCCGGACGuUGAcGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 36917 | 0.66 | 0.782553 |
Target: 5'- -gAGGCC--AAUGcucCCUGCAGUUGCCg -3' miRNA: 3'- uaUCCGGcuUUACc--GGACGUUGACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 40441 | 0.66 | 0.772308 |
Target: 5'- -gAGuCCGAucccGGCgUGCGGCUGCUu -3' miRNA: 3'- uaUCcGGCUuua-CCGgACGUUGACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 27106 | 0.66 | 0.772308 |
Target: 5'- aAUGGGaCGAAGccUGGUcggugCUGCGACgUGCCc -3' miRNA: 3'- -UAUCCgGCUUU--ACCG-----GACGUUG-ACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 42445 | 0.66 | 0.755605 |
Target: 5'- aAUGcGCCGAGaucGUGGCCUGCccaacacccaaaguGCggGCCa -3' miRNA: 3'- -UAUcCGGCUU---UACCGGACGu-------------UGa-CGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 6046 | 0.66 | 0.740711 |
Target: 5'- -cAGGUCGucAAUGGgCgcgUGUGGCUGCCu -3' miRNA: 3'- uaUCCGGCu-UUACCgG---ACGUUGACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 20747 | 0.66 | 0.740711 |
Target: 5'- uUGGccGCCGAucgGGCCUGUuccGCcGCCa -3' miRNA: 3'- uAUC--CGGCUuuaCCGGACGu--UGaCGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 37828 | 0.66 | 0.729932 |
Target: 5'- -aAGGCCGAuAUGGagCUGUGGg-GCCg -3' miRNA: 3'- uaUCCGGCUuUACCg-GACGUUgaCGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 58532 | 0.66 | 0.729932 |
Target: 5'- uGUAGGCgaUGguGUGGCCUugGUGGCgUGCCc -3' miRNA: 3'- -UAUCCG--GCuuUACCGGA--CGUUG-ACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 42885 | 0.67 | 0.719051 |
Target: 5'- -cAGGUCGAuGAUGGUCaUGCGAUaGCUc -3' miRNA: 3'- uaUCCGGCU-UUACCGG-ACGUUGaCGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 25906 | 0.67 | 0.719051 |
Target: 5'- --uGGCCGAAcuggagcgGGCCaacGCAACUauccGCCg -3' miRNA: 3'- uauCCGGCUUua------CCGGa--CGUUGA----CGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 22513 | 0.67 | 0.716864 |
Target: 5'- ---cGUCGAAGUGGCUUGCugcgacaugguuACUGCg -3' miRNA: 3'- uaucCGGCUUUACCGGACGu-----------UGACGg -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 45243 | 0.67 | 0.685914 |
Target: 5'- ---cGCCGAGAccacggGGCCUGCGAUggugUGCa -3' miRNA: 3'- uaucCGGCUUUa-----CCGGACGUUG----ACGg -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 11163 | 0.67 | 0.674745 |
Target: 5'- -gGGGCCGccaccaaGGCCgcccgGCAGCaggaUGCCa -3' miRNA: 3'- uaUCCGGCuuua---CCGGa----CGUUG----ACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 58439 | 0.68 | 0.663533 |
Target: 5'- -aAGGUCGGugugGAUGGCUgUGCcGACUGCg -3' miRNA: 3'- uaUCCGGCU----UUACCGG-ACG-UUGACGg -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 51940 | 0.68 | 0.61849 |
Target: 5'- -aGGGCUGAAAUGaCCUcugGCGugUGCg -3' miRNA: 3'- uaUCCGGCUUUACcGGA---CGUugACGg -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 11105 | 0.69 | 0.607234 |
Target: 5'- -gGGGCCGggG-GGCCgGCug--GCCc -3' miRNA: 3'- uaUCCGGCuuUaCCGGaCGuugaCGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 37863 | 0.69 | 0.584799 |
Target: 5'- uGUGGaGaUCGAAGUGGUCaccgGCAugACUGCCg -3' miRNA: 3'- -UAUC-C-GGCUUUACCGGa---CGU--UGACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 14920 | 0.69 | 0.57364 |
Target: 5'- -aGGGCCGAuu--GCCaUGCGGCUGUUu -3' miRNA: 3'- uaUCCGGCUuuacCGG-ACGUUGACGG- -5' |
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18082 | 5' | -53.9 | NC_004680.1 | + | 12972 | 0.69 | 0.55148 |
Target: 5'- uUGGGCUGGAccUGGCCUuggGCGGCgGCUu -3' miRNA: 3'- uAUCCGGCUUu-ACCGGA---CGUUGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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