miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18104 3' -58.3 NC_004680.1 + 21399 1.1 0.000527
Target:  5'- cCACGCCACCACCGCGAACACCGUGGCc -3'
miRNA:   3'- -GUGCGGUGGUGGCGCUUGUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 19396 0.75 0.163456
Target:  5'- uCAC-CCAguucggCACCGgGAACACCGUGGCc -3'
miRNA:   3'- -GUGcGGUg-----GUGGCgCUUGUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 18521 0.74 0.196372
Target:  5'- gCACGCCGCCGCggauaGCGGACaccACCGUGuCa -3'
miRNA:   3'- -GUGCGGUGGUGg----CGCUUG---UGGCACcG- -5'
18104 3' -58.3 NC_004680.1 + 12520 0.73 0.229058
Target:  5'- -cCGCCACCACCggugGUGGGCAgCGgGGCu -3'
miRNA:   3'- guGCGGUGGUGG----CGCUUGUgGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 25446 0.73 0.229058
Target:  5'- aCGCGCCgcgACUACCGcCGAgcuugACGCCGaacUGGCg -3'
miRNA:   3'- -GUGCGG---UGGUGGC-GCU-----UGUGGC---ACCG- -5'
18104 3' -58.3 NC_004680.1 + 24621 0.72 0.279654
Target:  5'- gGCGCCGCCACCGCcacCACCGc--- -3'
miRNA:   3'- gUGCGGUGGUGGCGcuuGUGGCaccg -5'
18104 3' -58.3 NC_004680.1 + 25839 0.72 0.293619
Target:  5'- -cCGCCACCACgGCGAGaccacggaGCCcUGGUg -3'
miRNA:   3'- guGCGGUGGUGgCGCUUg-------UGGcACCG- -5'
18104 3' -58.3 NC_004680.1 + 12309 0.71 0.300078
Target:  5'- cCACGCCACCggaACCGCucgcgggGAACGCUGccgcggacggGGCg -3'
miRNA:   3'- -GUGCGGUGG---UGGCG-------CUUGUGGCa---------CCG- -5'
18104 3' -58.3 NC_004680.1 + 19433 0.71 0.300802
Target:  5'- aACGCCACCACaUGgGuGCGCgGUGaGCa -3'
miRNA:   3'- gUGCGGUGGUG-GCgCuUGUGgCAC-CG- -5'
18104 3' -58.3 NC_004680.1 + 45181 0.71 0.308121
Target:  5'- gGCgGCUcUCGCCGCGAcgACACCaacGUGGCg -3'
miRNA:   3'- gUG-CGGuGGUGGCGCU--UGUGG---CACCG- -5'
18104 3' -58.3 NC_004680.1 + 24980 0.71 0.315575
Target:  5'- -cCGCCACCACCGCcGGcgGCACCGc--- -3'
miRNA:   3'- guGCGGUGGUGGCG-CU--UGUGGCaccg -5'
18104 3' -58.3 NC_004680.1 + 33864 0.71 0.322399
Target:  5'- uGCGCCGgcaggucCCACCG-GGACugCG-GGCa -3'
miRNA:   3'- gUGCGGU-------GGUGGCgCUUGugGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 58444 0.71 0.330888
Target:  5'- gCACGCCACCAaggccacaccaUCGCcuACACC-UGGCc -3'
miRNA:   3'- -GUGCGGUGGU-----------GGCGcuUGUGGcACCG- -5'
18104 3' -58.3 NC_004680.1 + 27282 0.71 0.338748
Target:  5'- gACGCUGCCGCCGaGAACcucGCCaaGUGGUu -3'
miRNA:   3'- gUGCGGUGGUGGCgCUUG---UGG--CACCG- -5'
18104 3' -58.3 NC_004680.1 + 28258 0.7 0.346742
Target:  5'- gACGCCgacACCGcCCGCGccgucgaagacaAAUACCuGUGGCa -3'
miRNA:   3'- gUGCGG---UGGU-GGCGC------------UUGUGG-CACCG- -5'
18104 3' -58.3 NC_004680.1 + 21925 0.7 0.35487
Target:  5'- gGCGUCACCcucacuCC-CGAggugggcaugGCGCCGUGGCc -3'
miRNA:   3'- gUGCGGUGGu-----GGcGCU----------UGUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 14712 0.7 0.35487
Target:  5'- uGCGCCGCUACC-CGAuguaGCCccuggaGUGGCa -3'
miRNA:   3'- gUGCGGUGGUGGcGCUug--UGG------CACCG- -5'
18104 3' -58.3 NC_004680.1 + 6124 0.7 0.35487
Target:  5'- aCGCGCCcauugacgACCugCGCccGCACCcgaGUGGCc -3'
miRNA:   3'- -GUGCGG--------UGGugGCGcuUGUGG---CACCG- -5'
18104 3' -58.3 NC_004680.1 + 11248 0.7 0.363132
Target:  5'- gACGUUGCCGCCGgGGAUuCC-UGGCa -3'
miRNA:   3'- gUGCGGUGGUGGCgCUUGuGGcACCG- -5'
18104 3' -58.3 NC_004680.1 + 42209 0.7 0.371526
Target:  5'- gGCuGCCACCACCGCaccguGCAgCGUGcccGCg -3'
miRNA:   3'- gUG-CGGUGGUGGCGcu---UGUgGCAC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.