miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18104 3' -58.3 NC_004680.1 + 35907 0.69 0.388707
Target:  5'- cCGCGgCACCuuguCCGCGAucaaucuggcCGCCGgGGCg -3'
miRNA:   3'- -GUGCgGUGGu---GGCGCUu---------GUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 39649 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39685 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCaugGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39721 0.7 0.380052
Target:  5'- aGCGCCGCagagagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39757 0.7 0.380052
Target:  5'- aGCGCCGCauggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39853 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCagaGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 22713 0.69 0.388707
Target:  5'- aACGCCACCGCCacCGGA-ACCGUgcaaaaGGCu -3'
miRNA:   3'- gUGCGGUGGUGGc-GCUUgUGGCA------CCG- -5'
18104 3' -58.3 NC_004680.1 + 45152 0.69 0.388707
Target:  5'- -cUGCaCACCAUCGCaGGCcCCGUGGUc -3'
miRNA:   3'- guGCG-GUGGUGGCGcUUGuGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 58711 0.69 0.388707
Target:  5'- uGCGCagCAUCAUCGCGAaggaauGCGCCGauaGGCa -3'
miRNA:   3'- gUGCG--GUGGUGGCGCU------UGUGGCa--CCG- -5'
18104 3' -58.3 NC_004680.1 + 39577 0.7 0.380052
Target:  5'- aGCGCCGCauggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 25645 0.7 0.379193
Target:  5'- gACGCCGCacccaaaCACUGCGAcaaccacgGCACCGgcaccGGCc -3'
miRNA:   3'- gUGCGGUG-------GUGGCGCU--------UGUGGCa----CCG- -5'
18104 3' -58.3 NC_004680.1 + 42209 0.7 0.371526
Target:  5'- gGCuGCCACCACCGCaccguGCAgCGUGcccGCg -3'
miRNA:   3'- gUG-CGGUGGUGGCGcu---UGUgGCAC---CG- -5'
18104 3' -58.3 NC_004680.1 + 19433 0.71 0.300802
Target:  5'- aACGCCACCACaUGgGuGCGCgGUGaGCa -3'
miRNA:   3'- gUGCGGUGGUG-GCgCuUGUGgCAC-CG- -5'
18104 3' -58.3 NC_004680.1 + 45181 0.71 0.308121
Target:  5'- gGCgGCUcUCGCCGCGAcgACACCaacGUGGCg -3'
miRNA:   3'- gUG-CGGuGGUGGCGCU--UGUGG---CACCG- -5'
18104 3' -58.3 NC_004680.1 + 58444 0.71 0.330888
Target:  5'- gCACGCCACCAaggccacaccaUCGCcuACACC-UGGCc -3'
miRNA:   3'- -GUGCGGUGGU-----------GGCGcuUGUGGcACCG- -5'
18104 3' -58.3 NC_004680.1 + 27282 0.71 0.338748
Target:  5'- gACGCUGCCGCCGaGAACcucGCCaaGUGGUu -3'
miRNA:   3'- gUGCGGUGGUGGCgCUUG---UGG--CACCG- -5'
18104 3' -58.3 NC_004680.1 + 28258 0.7 0.346742
Target:  5'- gACGCCgacACCGcCCGCGccgucgaagacaAAUACCuGUGGCa -3'
miRNA:   3'- gUGCGG---UGGU-GGCGC------------UUGUGG-CACCG- -5'
18104 3' -58.3 NC_004680.1 + 14712 0.7 0.35487
Target:  5'- uGCGCCGCUACC-CGAuguaGCCccuggaGUGGCa -3'
miRNA:   3'- gUGCGGUGGUGGcGCUug--UGG------CACCG- -5'
18104 3' -58.3 NC_004680.1 + 21925 0.7 0.35487
Target:  5'- gGCGUCACCcucacuCC-CGAggugggcaugGCGCCGUGGCc -3'
miRNA:   3'- gUGCGGUGGu-----GGcGCU----------UGUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 11248 0.7 0.363132
Target:  5'- gACGUUGCCGCCGgGGAUuCC-UGGCa -3'
miRNA:   3'- gUGCGGUGGUGGCgCUUGuGGcACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.