miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18129 5' -52.6 NC_004680.1 + 56643 0.69 0.699215
Target:  5'- aCGAcacccucuACUUCUaCUGCGACGuccccgccacaucAGUGGCCCg -3'
miRNA:   3'- -GCU--------UGAAGAcGGUGCUGC-------------UCAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 55220 0.68 0.784092
Target:  5'- uGAGCgUCUGguCCACgGugGGGUGGCUUc -3'
miRNA:   3'- gCUUGaAGAC--GGUG-CugCUCAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 53458 0.66 0.865963
Target:  5'- gGAACUcgUGUCugGCGGCGGGUagguGGCCUu -3'
miRNA:   3'- gCUUGAagACGG--UGCUGCUCA----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 50386 0.67 0.831659
Target:  5'- aCGAAgUgccCUGCCcaaGCGAUGAGgucgaccuuccGGCCCg -3'
miRNA:   3'- -GCUUgAa--GACGG---UGCUGCUCa----------UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 47631 0.69 0.699215
Target:  5'- aGAGCaUUUGCCGCGAUcugauaaGAGUcGCUCa -3'
miRNA:   3'- gCUUGaAGACGGUGCUG-------CUCAuCGGG- -5'
18129 5' -52.6 NC_004680.1 + 42597 0.7 0.667455
Target:  5'- -cGGCaUCaGCCGCGGCGA--AGCCCa -3'
miRNA:   3'- gcUUGaAGaCGGUGCUGCUcaUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 41721 0.7 0.64537
Target:  5'- uGGACUUCUGCCaguuggaugaACGGUGAGUucGCCa -3'
miRNA:   3'- gCUUGAAGACGG----------UGCUGCUCAu-CGGg -5'
18129 5' -52.6 NC_004680.1 + 40992 0.66 0.857736
Target:  5'- uCGGGggUCgaGCCugG-UGAGUAGUCCa -3'
miRNA:   3'- -GCUUgaAGa-CGGugCuGCUCAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 40687 0.68 0.793969
Target:  5'- aGAGCcccacGCCACGACGuGcgcagAGCCCc -3'
miRNA:   3'- gCUUGaaga-CGGUGCUGCuCa----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 40670 0.68 0.784092
Target:  5'- gGGGCU-CUGCgCACGuCGAGgcgcggGGCUCu -3'
miRNA:   3'- gCUUGAaGACG-GUGCuGCUCa-----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 40615 0.68 0.763872
Target:  5'- aGAGCcccacGCCACGACGcGUgcagAGCCCc -3'
miRNA:   3'- gCUUGaaga-CGGUGCUGCuCA----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 40567 0.69 0.700302
Target:  5'- aGAGCcccacGCCACGACGuGcgcagAGCCCg -3'
miRNA:   3'- gCUUGaaga-CGGUGCUGCuCa----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 40502 0.68 0.784092
Target:  5'- gGGGCU-CUGCgCACGuCGAGgcguggGGCUCu -3'
miRNA:   3'- gCUUGAaGACG-GUGCuGCUCa-----UCGGG- -5'
18129 5' -52.6 NC_004680.1 + 38955 0.66 0.88167
Target:  5'- gCGGGCgaaCUGCUugGugGAGUcgauGGCg- -3'
miRNA:   3'- -GCUUGaa-GACGGugCugCUCA----UCGgg -5'
18129 5' -52.6 NC_004680.1 + 36302 1.13 0.001189
Target:  5'- uCGAACUUCUGCCACGACGAGUAGCCCa -3'
miRNA:   3'- -GCUUGAAGACGGUGCUGCUCAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 36264 0.66 0.88167
Target:  5'- -aGACggCUGCCGCGAgCGAGggauucaacGUCCg -3'
miRNA:   3'- gcUUGaaGACGGUGCU-GCUCau-------CGGG- -5'
18129 5' -52.6 NC_004680.1 + 33645 0.67 0.813198
Target:  5'- aGGAgUUCc-CCACGGCGGGc-GCCCg -3'
miRNA:   3'- gCUUgAAGacGGUGCUGCUCauCGGG- -5'
18129 5' -52.6 NC_004680.1 + 28255 0.68 0.763872
Target:  5'- aCGAcCg---GCCGCGGaaGGUAGCCCa -3'
miRNA:   3'- -GCUuGaagaCGGUGCUgcUCAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 24361 0.67 0.831659
Target:  5'- gGAACgggUCgaGUUACGACaagcuGUGGCCCa -3'
miRNA:   3'- gCUUGa--AGa-CGGUGCUGcu---CAUCGGG- -5'
18129 5' -52.6 NC_004680.1 + 23320 0.73 0.503957
Target:  5'- aCGAACg--UGCC-CGACGAGcUGGCCg -3'
miRNA:   3'- -GCUUGaagACGGuGCUGCUC-AUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.