miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18134 3' -57.9 NC_004680.1 + 24548 0.69 0.446104
Target:  5'- -cCGCCGcaccGAUCAGUGUCACCCAgCAa -3'
miRNA:   3'- gcGCGGCc---CUGGUUACAGUGGGU-GUc -5'
18134 3' -57.9 NC_004680.1 + 24846 0.66 0.599477
Target:  5'- gGCGCCGGGGacuaCAAcgcUGcgggCGCCCcCGGa -3'
miRNA:   3'- gCGCGGCCCUg---GUU---ACa---GUGGGuGUC- -5'
18134 3' -57.9 NC_004680.1 + 28322 0.68 0.505275
Target:  5'- gGCGUCGGGGCCGAUc-CACCagggaACAc -3'
miRNA:   3'- gCGCGGCCCUGGUUAcaGUGGg----UGUc -5'
18134 3' -57.9 NC_004680.1 + 28382 0.71 0.317128
Target:  5'- uGCuGCUGGGuaGCCGAUGggUugCCACAGg -3'
miRNA:   3'- gCG-CGGCCC--UGGUUACa-GugGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 35206 0.66 0.620895
Target:  5'- aGaCGCCGcGACCAGUGaCACgaCGCAGc -3'
miRNA:   3'- gC-GCGGCcCUGGUUACaGUGg-GUGUC- -5'
18134 3' -57.9 NC_004680.1 + 38791 0.66 0.609106
Target:  5'- cCGCGCCGGGACCcuccaacggcuggGAcgaacUG-CACaaGCAGg -3'
miRNA:   3'- -GCGCGGCCCUGG-------------UU-----ACaGUGggUGUC- -5'
18134 3' -57.9 NC_004680.1 + 38830 1.09 0.000606
Target:  5'- cCGCGCCGGGACCAAUGUCACCCACAGg -3'
miRNA:   3'- -GCGCGGCCCUGGUUACAGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 41417 0.73 0.241766
Target:  5'- gGCgagGCCGGGGCCGAUGaUGCCgGCGGc -3'
miRNA:   3'- gCG---CGGCCCUGGUUACaGUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 41928 0.66 0.599477
Target:  5'- uGCGgUGaGGugUucgaaccgGUCACCCGCAGg -3'
miRNA:   3'- gCGCgGC-CCugGuua-----CAGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 42766 0.67 0.525751
Target:  5'- uGCGCUGaauGGCgAGUGaUCGCCCGCAu -3'
miRNA:   3'- gCGCGGCc--CUGgUUAC-AGUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 43547 0.7 0.348609
Target:  5'- gGUGCCaGGACCGGUugUGCCCACAu -3'
miRNA:   3'- gCGCGGcCCUGGUUAcaGUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 44097 0.7 0.391001
Target:  5'- -aUGCCGGGAguauucgcCCGAUGagGCCCGCGa -3'
miRNA:   3'- gcGCGGCCCU--------GGUUACagUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 44891 0.68 0.47523
Target:  5'- aGCGCUGGcGGCCGAg---ACCCugAGg -3'
miRNA:   3'- gCGCGGCC-CUGGUUacagUGGGugUC- -5'
18134 3' -57.9 NC_004680.1 + 51234 0.67 0.536106
Target:  5'- cCGUGCCuGGGACCAGUcGUgcgaagacugCGCUCAguGg -3'
miRNA:   3'- -GCGCGG-CCCUGGUUA-CA----------GUGGGUguC- -5'
18134 3' -57.9 NC_004680.1 + 54379 0.67 0.557022
Target:  5'- uGcCGaCCGGGAucCCGAUGUgGaCCCACGa -3'
miRNA:   3'- gC-GC-GGCCCU--GGUUACAgU-GGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 55843 0.69 0.418
Target:  5'- aGCGCCGcuuGGACUAGaagCAUCCACGGu -3'
miRNA:   3'- gCGCGGC---CCUGGUUacaGUGGGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.