miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18134 3' -57.9 NC_004680.1 + 2865 0.66 0.620895
Target:  5'- uGCGCCGGGACgaCGAcUG-CACaaagCACGGa -3'
miRNA:   3'- gCGCGGCCCUG--GUU-ACaGUGg---GUGUC- -5'
18134 3' -57.9 NC_004680.1 + 3083 0.69 0.399874
Target:  5'- cCGCGCCGGGAgCGuuGUGggaguugCcCCCugGGg -3'
miRNA:   3'- -GCGCGGCCCUgGU--UACa------GuGGGugUC- -5'
18134 3' -57.9 NC_004680.1 + 4471 0.67 0.567568
Target:  5'- aGCGCCGuaacGGAgCCAGUGgaACCgGCAGu -3'
miRNA:   3'- gCGCGGC----CCU-GGUUACagUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 5446 0.7 0.373646
Target:  5'- gGUGUCGGuGGCCAgggccGUGgCACCCGCAc -3'
miRNA:   3'- gCGCGGCC-CUGGU-----UACaGUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 8877 0.77 0.124967
Target:  5'- cCGCGCCGGGACgGGUcucCGCCgGCAGg -3'
miRNA:   3'- -GCGCGGCCCUGgUUAca-GUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 11169 0.75 0.186779
Target:  5'- gGCGCCGGGGCCGccaccaagGcCGCCCgGCAGc -3'
miRNA:   3'- gCGCGGCCCUGGUua------CaGUGGG-UGUC- -5'
18134 3' -57.9 NC_004680.1 + 11251 0.74 0.207319
Target:  5'- aCGCGCCaGGAggcggcagaaUCGG-GUCACCCGCAGg -3'
miRNA:   3'- -GCGCGGcCCU----------GGUUaCAGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 12227 0.67 0.567568
Target:  5'- aGCGCCGgacGGGuuGAUGUUGCCCGgGu -3'
miRNA:   3'- gCGCGGC---CCUggUUACAGUGGGUgUc -5'
18134 3' -57.9 NC_004680.1 + 12347 0.7 0.382258
Target:  5'- aGCGCCuugggcGGGCCAGUucGUCACCgACAc -3'
miRNA:   3'- gCGCGGc-----CCUGGUUA--CAGUGGgUGUc -5'
18134 3' -57.9 NC_004680.1 + 12709 0.67 0.564399
Target:  5'- aGCGCCGGGuGCCAucgcguccagcgccAUGcCGCCgGCc- -3'
miRNA:   3'- gCGCGGCCC-UGGU--------------UACaGUGGgUGuc -5'
18134 3' -57.9 NC_004680.1 + 13936 0.67 0.567568
Target:  5'- uGCuGUCGcGGCCcAUGcgCGCCCACAGg -3'
miRNA:   3'- gCG-CGGCcCUGGuUACa-GUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 14256 0.73 0.241766
Target:  5'- cCGCaCCGGGGCUggUGUCGCCUg--- -3'
miRNA:   3'- -GCGcGGCCCUGGuuACAGUGGGuguc -5'
18134 3' -57.9 NC_004680.1 + 14395 0.69 0.403459
Target:  5'- cCGCGCCGGGACCGucguacaaccggaacGUGcCAggaCCgaACAGg -3'
miRNA:   3'- -GCGCGGCCCUGGU---------------UACaGUg--GG--UGUC- -5'
18134 3' -57.9 NC_004680.1 + 14816 0.67 0.536106
Target:  5'- uCGgGCCGGGGCU--UGcCACuCCAgGGg -3'
miRNA:   3'- -GCgCGGCCCUGGuuACaGUG-GGUgUC- -5'
18134 3' -57.9 NC_004680.1 + 17152 0.68 0.485149
Target:  5'- uGCGCCGGGAUCGA---CACCUgggcCAGa -3'
miRNA:   3'- gCGCGGCCCUGGUUacaGUGGGu---GUC- -5'
18134 3' -57.9 NC_004680.1 + 19688 0.66 0.599477
Target:  5'- gGCGgCGGaGACCAGaagGUCAUgggcggCCACGGu -3'
miRNA:   3'- gCGCgGCC-CUGGUUa--CAGUG------GGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 21257 0.68 0.495165
Target:  5'- uCGUcgGCCGGGGCUggUGUCgguaGCgCCACu- -3'
miRNA:   3'- -GCG--CGGCCCUGGuuACAG----UG-GGUGuc -5'
18134 3' -57.9 NC_004680.1 + 21635 0.67 0.536106
Target:  5'- uCG-GCCGGGGCCGgggggGUGUCgucguccaaGCUCACAa -3'
miRNA:   3'- -GCgCGGCCCUGGU-----UACAG---------UGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 22206 0.66 0.610177
Target:  5'- gGCGUCGGGAaCAGcGaCACCgACGGa -3'
miRNA:   3'- gCGCGGCCCUgGUUaCaGUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 24296 0.69 0.427249
Target:  5'- gGUGCCGGGAagGGUGgugccCAUCCACAu -3'
miRNA:   3'- gCGCGGCCCUggUUACa----GUGGGUGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.