Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18134 | 3' | -57.9 | NC_004680.1 | + | 44097 | 0.7 | 0.391001 |
Target: 5'- -aUGCCGGGAguauucgcCCGAUGagGCCCGCGa -3' miRNA: 3'- gcGCGGCCCU--------GGUUACagUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 38791 | 0.66 | 0.609106 |
Target: 5'- cCGCGCCGGGACCcuccaacggcuggGAcgaacUG-CACaaGCAGg -3' miRNA: 3'- -GCGCGGCCCUGG-------------UU-----ACaGUGggUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 41928 | 0.66 | 0.599477 |
Target: 5'- uGCGgUGaGGugUucgaaccgGUCACCCGCAGg -3' miRNA: 3'- gCGCgGC-CCugGuua-----CAGUGGGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 24846 | 0.66 | 0.599477 |
Target: 5'- gGCGCCGGGGacuaCAAcgcUGcgggCGCCCcCGGa -3' miRNA: 3'- gCGCGGCCCUg---GUU---ACa---GUGGGuGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 19688 | 0.66 | 0.599477 |
Target: 5'- gGCGgCGGaGACCAGaagGUCAUgggcggCCACGGu -3' miRNA: 3'- gCGCgGCC-CUGGUUa--CAGUG------GGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 4471 | 0.67 | 0.567568 |
Target: 5'- aGCGCCGuaacGGAgCCAGUGgaACCgGCAGu -3' miRNA: 3'- gCGCGGC----CCU-GGUUACagUGGgUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 54379 | 0.67 | 0.557022 |
Target: 5'- uGcCGaCCGGGAucCCGAUGUgGaCCCACGa -3' miRNA: 3'- gC-GC-GGCCCU--GGUUACAgU-GGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 51234 | 0.67 | 0.536106 |
Target: 5'- cCGUGCCuGGGACCAGUcGUgcgaagacugCGCUCAguGg -3' miRNA: 3'- -GCGCGG-CCCUGGUUA-CA----------GUGGGUguC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 21635 | 0.67 | 0.536106 |
Target: 5'- uCG-GCCGGGGCCGgggggGUGUCgucguccaaGCUCACAa -3' miRNA: 3'- -GCgCGGCCCUGGU-----UACAG---------UGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 42766 | 0.67 | 0.525751 |
Target: 5'- uGCGCUGaauGGCgAGUGaUCGCCCGCAu -3' miRNA: 3'- gCGCGGCc--CUGgUUAC-AGUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 21257 | 0.68 | 0.495165 |
Target: 5'- uCGUcgGCCGGGGCUggUGUCgguaGCgCCACu- -3' miRNA: 3'- -GCG--CGGCCCUGGuuACAG----UG-GGUGuc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 44891 | 0.68 | 0.47523 |
Target: 5'- aGCGCUGGcGGCCGAg---ACCCugAGg -3' miRNA: 3'- gCGCGGCC-CUGGUUacagUGGGugUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 3083 | 0.69 | 0.399874 |
Target: 5'- cCGCGCCGGGAgCGuuGUGggaguugCcCCCugGGg -3' miRNA: 3'- -GCGCGGCCCUgGU--UACa------GuGGGugUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 14816 | 0.67 | 0.536106 |
Target: 5'- uCGgGCCGGGGCU--UGcCACuCCAgGGg -3' miRNA: 3'- -GCgCGGCCCUGGuuACaGUG-GGUgUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 12709 | 0.67 | 0.564399 |
Target: 5'- aGCGCCGGGuGCCAucgcguccagcgccAUGcCGCCgGCc- -3' miRNA: 3'- gCGCGGCCC-UGGU--------------UACaGUGGgUGuc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 12227 | 0.67 | 0.567568 |
Target: 5'- aGCGCCGgacGGGuuGAUGUUGCCCGgGu -3' miRNA: 3'- gCGCGGC---CCUggUUACAGUGGGUgUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 13936 | 0.67 | 0.567568 |
Target: 5'- uGCuGUCGcGGCCcAUGcgCGCCCACAGg -3' miRNA: 3'- gCG-CGGCcCUGGuUACa-GUGGGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 22206 | 0.66 | 0.610177 |
Target: 5'- gGCGUCGGGAaCAGcGaCACCgACGGa -3' miRNA: 3'- gCGCGGCCCUgGUUaCaGUGGgUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 35206 | 0.66 | 0.620895 |
Target: 5'- aGaCGCCGcGACCAGUGaCACgaCGCAGc -3' miRNA: 3'- gC-GCGGCcCUGGUUACaGUGg-GUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 38830 | 1.09 | 0.000606 |
Target: 5'- cCGCGCCGGGACCAAUGUCACCCACAGg -3' miRNA: 3'- -GCGCGGCCCUGGUUACAGUGGGUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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