miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18134 3' -57.9 NC_004680.1 + 38830 1.09 0.000606
Target:  5'- cCGCGCCGGGACCAAUGUCACCCACAGg -3'
miRNA:   3'- -GCGCGGCCCUGGUUACAGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 8877 0.77 0.124967
Target:  5'- cCGCGCCGGGACgGGUcucCGCCgGCAGg -3'
miRNA:   3'- -GCGCGGCCCUGgUUAca-GUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 11169 0.75 0.186779
Target:  5'- gGCGCCGGGGCCGccaccaagGcCGCCCgGCAGc -3'
miRNA:   3'- gCGCGGCCCUGGUua------CaGUGGG-UGUC- -5'
18134 3' -57.9 NC_004680.1 + 11251 0.74 0.207319
Target:  5'- aCGCGCCaGGAggcggcagaaUCGG-GUCACCCGCAGg -3'
miRNA:   3'- -GCGCGGcCCU----------GGUUaCAGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 14256 0.73 0.241766
Target:  5'- cCGCaCCGGGGCUggUGUCGCCUg--- -3'
miRNA:   3'- -GCGcGGCCCUGGuuACAGUGGGuguc -5'
18134 3' -57.9 NC_004680.1 + 41417 0.73 0.241766
Target:  5'- gGCgagGCCGGGGCCGAUGaUGCCgGCGGc -3'
miRNA:   3'- gCG---CGGCCCUGGUUACaGUGGgUGUC- -5'
18134 3' -57.9 NC_004680.1 + 28382 0.71 0.317128
Target:  5'- uGCuGCUGGGuaGCCGAUGggUugCCACAGg -3'
miRNA:   3'- gCG-CGGCCC--UGGUUACa-GugGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 43547 0.7 0.348609
Target:  5'- gGUGCCaGGACCGGUugUGCCCACAu -3'
miRNA:   3'- gCGCGGcCCUGGUUAcaGUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 5446 0.7 0.373646
Target:  5'- gGUGUCGGuGGCCAgggccGUGgCACCCGCAc -3'
miRNA:   3'- gCGCGGCC-CUGGU-----UACaGUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 12347 0.7 0.382258
Target:  5'- aGCGCCuugggcGGGCCAGUucGUCACCgACAc -3'
miRNA:   3'- gCGCGGc-----CCUGGUUA--CAGUGGgUGUc -5'
18134 3' -57.9 NC_004680.1 + 44097 0.7 0.391001
Target:  5'- -aUGCCGGGAguauucgcCCGAUGagGCCCGCGa -3'
miRNA:   3'- gcGCGGCCCU--------GGUUACagUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 3083 0.69 0.399874
Target:  5'- cCGCGCCGGGAgCGuuGUGggaguugCcCCCugGGg -3'
miRNA:   3'- -GCGCGGCCCUgGU--UACa------GuGGGugUC- -5'
18134 3' -57.9 NC_004680.1 + 14395 0.69 0.403459
Target:  5'- cCGCGCCGGGACCGucguacaaccggaacGUGcCAggaCCgaACAGg -3'
miRNA:   3'- -GCGCGGCCCUGGU---------------UACaGUg--GG--UGUC- -5'
18134 3' -57.9 NC_004680.1 + 55843 0.69 0.418
Target:  5'- aGCGCCGcuuGGACUAGaagCAUCCACGGu -3'
miRNA:   3'- gCGCGGC---CCUGGUUacaGUGGGUGUC- -5'
18134 3' -57.9 NC_004680.1 + 24296 0.69 0.427249
Target:  5'- gGUGCCGGGAagGGUGgugccCAUCCACAu -3'
miRNA:   3'- gCGCGGCCCUggUUACa----GUGGGUGUc -5'
18134 3' -57.9 NC_004680.1 + 24548 0.69 0.446104
Target:  5'- -cCGCCGcaccGAUCAGUGUCACCCAgCAa -3'
miRNA:   3'- gcGCGGCc---CUGGUUACAGUGGGU-GUc -5'
18134 3' -57.9 NC_004680.1 + 44891 0.68 0.47523
Target:  5'- aGCGCUGGcGGCCGAg---ACCCugAGg -3'
miRNA:   3'- gCGCGGCC-CUGGUUacagUGGGugUC- -5'
18134 3' -57.9 NC_004680.1 + 17152 0.68 0.485149
Target:  5'- uGCGCCGGGAUCGA---CACCUgggcCAGa -3'
miRNA:   3'- gCGCGGCCCUGGUUacaGUGGGu---GUC- -5'
18134 3' -57.9 NC_004680.1 + 21257 0.68 0.495165
Target:  5'- uCGUcgGCCGGGGCUggUGUCgguaGCgCCACu- -3'
miRNA:   3'- -GCG--CGGCCCUGGuuACAG----UG-GGUGuc -5'
18134 3' -57.9 NC_004680.1 + 28322 0.68 0.505275
Target:  5'- gGCGUCGGGGCCGAUc-CACCagggaACAc -3'
miRNA:   3'- gCGCGGCCCUGGUUAcaGUGGg----UGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.