miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18162 5' -61.2 NC_004680.1 + 890 0.68 0.354066
Target:  5'- aCGCCGCGaacucGGUCUUGGCuaCGCCCuuccugaguucGACGc -3'
miRNA:   3'- -GCGGCGUa----CUAGGACCG--GCGGG-----------CUGC- -5'
18162 5' -61.2 NC_004680.1 + 1837 0.67 0.37877
Target:  5'- uCGCCGCGUGggCg-GGCCGguuCCCGGa- -3'
miRNA:   3'- -GCGGCGUACuaGgaCCGGC---GGGCUgc -5'
18162 5' -61.2 NC_004680.1 + 3928 0.67 0.370408
Target:  5'- gCGCCGUAUcGAgaaCCUGGCgGgCaCCGACc -3'
miRNA:   3'- -GCGGCGUA-CUa--GGACCGgC-G-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 3941 0.69 0.272151
Target:  5'- uGCCGUacgugcuGUGAUCacgGGCCGCgcguacacauucuCCGACGg -3'
miRNA:   3'- gCGGCG-------UACUAGga-CCGGCG-------------GGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 9862 0.68 0.346087
Target:  5'- gGCCGCGcguugGGUaCCgcuuucacGGCCGCCgCGACa -3'
miRNA:   3'- gCGGCGUa----CUA-GGa-------CCGGCGG-GCUGc -5'
18162 5' -61.2 NC_004680.1 + 11058 0.69 0.293889
Target:  5'- cCGCCGUcgAUGGcaUCCU-GCUGCCgGGCGg -3'
miRNA:   3'- -GCGGCG--UACU--AGGAcCGGCGGgCUGC- -5'
18162 5' -61.2 NC_004680.1 + 11170 0.7 0.236071
Target:  5'- gGgCGCcgGggCCgccaccaaGGCCGCCCGGCa -3'
miRNA:   3'- gCgGCGuaCuaGGa-------CCGGCGGGCUGc -5'
18162 5' -61.2 NC_004680.1 + 11253 0.68 0.322933
Target:  5'- uGCCGCcgGGgauUCCUGGCaUGCCgcagGACGc -3'
miRNA:   3'- gCGGCGuaCU---AGGACCG-GCGGg---CUGC- -5'
18162 5' -61.2 NC_004680.1 + 12043 0.67 0.39587
Target:  5'- gGCUacggGCGcGGUCCUcaaGGUCGCCUGAUGg -3'
miRNA:   3'- gCGG----CGUaCUAGGA---CCGGCGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 12049 0.66 0.468987
Target:  5'- uGCUGCAaaa-CCU-GCUGCCCGAUGg -3'
miRNA:   3'- gCGGCGUacuaGGAcCGGCGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 12786 0.66 0.41346
Target:  5'- gCGCCGaucgcggcGA-CCUGGCCGCCguacuCGAUGg -3'
miRNA:   3'- -GCGGCgua-----CUaGGACCGGCGG-----GCUGC- -5'
18162 5' -61.2 NC_004680.1 + 12925 0.66 0.431524
Target:  5'- gCGCUGC-UGGgaagCCUGGCCaGCCagguuCGGCa -3'
miRNA:   3'- -GCGGCGuACUa---GGACCGG-CGG-----GCUGc -5'
18162 5' -61.2 NC_004680.1 + 14667 0.66 0.450041
Target:  5'- uCGCCGCGUucUCaCUGaaCCGCcCCGACa -3'
miRNA:   3'- -GCGGCGUAcuAG-GACc-GGCG-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 14842 0.67 0.362173
Target:  5'- aGCCGCAUGG-CaaucGGCCcuccaGUCCGGCGa -3'
miRNA:   3'- gCGGCGUACUaGga--CCGG-----CGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 17328 0.66 0.440727
Target:  5'- cCGCCGCA-GGUCCcGccaccaggaucaGCCGCuCCGAUu -3'
miRNA:   3'- -GCGGCGUaCUAGGaC------------CGGCG-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 23437 0.68 0.338239
Target:  5'- gGCaCGC-UGAUCgUgcaGGCCGCCCG-CGu -3'
miRNA:   3'- gCG-GCGuACUAGgA---CCGGCGGGCuGC- -5'
18162 5' -61.2 NC_004680.1 + 27579 0.71 0.208266
Target:  5'- cCGCCGUacGUGAa--UGGCCGCcCCGGCa -3'
miRNA:   3'- -GCGGCG--UACUaggACCGGCG-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 27832 0.67 0.39587
Target:  5'- gGCCGCAg---CUcGGCgGCCgGACGg -3'
miRNA:   3'- gCGGCGUacuaGGaCCGgCGGgCUGC- -5'
18162 5' -61.2 NC_004680.1 + 29168 0.68 0.315476
Target:  5'- uGCCGCAUGAUCUUGGaaucggUGCgCGAa- -3'
miRNA:   3'- gCGGCGUACUAGGACCg-----GCGgGCUgc -5'
18162 5' -61.2 NC_004680.1 + 33545 0.69 0.30815
Target:  5'- uCGCCGCcgGuuUCCUgacGGgCGCCCGcCGu -3'
miRNA:   3'- -GCGGCGuaCu-AGGA---CCgGCGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.