miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18162 5' -61.2 NC_004680.1 + 46657 0.66 0.468987
Target:  5'- aGCC---UGAgUUCUGGCgGUCCGACGa -3'
miRNA:   3'- gCGGcguACU-AGGACCGgCGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 14842 0.67 0.362173
Target:  5'- aGCCGCAUGG-CaaucGGCCcuccaGUCCGGCGa -3'
miRNA:   3'- gCGGCGUACUaGga--CCGG-----CGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 3928 0.67 0.370408
Target:  5'- gCGCCGUAUcGAgaaCCUGGCgGgCaCCGACc -3'
miRNA:   3'- -GCGGCGUA-CUa--GGACCGgC-G-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 1837 0.67 0.37877
Target:  5'- uCGCCGCGUGggCg-GGCCGguuCCCGGa- -3'
miRNA:   3'- -GCGGCGUACuaGgaCCGGC---GGGCUgc -5'
18162 5' -61.2 NC_004680.1 + 12043 0.67 0.39587
Target:  5'- gGCUacggGCGcGGUCCUcaaGGUCGCCUGAUGg -3'
miRNA:   3'- gCGG----CGUaCUAGGA---CCGGCGGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 27832 0.67 0.39587
Target:  5'- gGCCGCAg---CUcGGCgGCCgGACGg -3'
miRNA:   3'- gCGGCGUacuaGGaCCGgCGGgCUGC- -5'
18162 5' -61.2 NC_004680.1 + 35905 0.66 0.409904
Target:  5'- aGCCGCGgcaccuuguccgcGAUCaauCUGGCCGCCgGgGCGc -3'
miRNA:   3'- gCGGCGUa------------CUAG---GACCGGCGGgC-UGC- -5'
18162 5' -61.2 NC_004680.1 + 38576 0.66 0.440727
Target:  5'- uGCUGUGgugGAUCCgUGGCUGgCCCGGu- -3'
miRNA:   3'- gCGGCGUa--CUAGG-ACCGGC-GGGCUgc -5'
18162 5' -61.2 NC_004680.1 + 45167 0.66 0.450041
Target:  5'- gGCCcCGUGGUCUcGGCggcucuCGCCgCGACGa -3'
miRNA:   3'- gCGGcGUACUAGGaCCG------GCGG-GCUGC- -5'
18162 5' -61.2 NC_004680.1 + 9862 0.68 0.346087
Target:  5'- gGCCGCGcguugGGUaCCgcuuucacGGCCGCCgCGACa -3'
miRNA:   3'- gCGGCGUa----CUA-GGa-------CCGGCGG-GCUGc -5'
18162 5' -61.2 NC_004680.1 + 23437 0.68 0.338239
Target:  5'- gGCaCGC-UGAUCgUgcaGGCCGCCCG-CGu -3'
miRNA:   3'- gCG-GCGuACUAGgA---CCGGCGGGCuGC- -5'
18162 5' -61.2 NC_004680.1 + 41062 0.68 0.322933
Target:  5'- gGCUGgAUGAgCUUGuGCCGCUgGACGa -3'
miRNA:   3'- gCGGCgUACUaGGAC-CGGCGGgCUGC- -5'
18162 5' -61.2 NC_004680.1 + 27579 0.71 0.208266
Target:  5'- cCGCCGUacGUGAa--UGGCCGCcCCGGCa -3'
miRNA:   3'- -GCGGCG--UACUaggACCGGCG-GGCUGc -5'
18162 5' -61.2 NC_004680.1 + 44561 0.69 0.286954
Target:  5'- aCGCCGCAUGAUcgacgcCCUGGUguccuauCCCGGCc -3'
miRNA:   3'- -GCGGCGUACUA------GGACCGgc-----GGGCUGc -5'
18162 5' -61.2 NC_004680.1 + 11058 0.69 0.293889
Target:  5'- cCGCCGUcgAUGGcaUCCU-GCUGCCgGGCGg -3'
miRNA:   3'- -GCGGCG--UACU--AGGAcCGGCGGgCUGC- -5'
18162 5' -61.2 NC_004680.1 + 33545 0.69 0.30815
Target:  5'- uCGCCGCcgGuuUCCUgacGGgCGCCCGcCGu -3'
miRNA:   3'- -GCGGCGuaCu-AGGA---CCgGCGGGCuGC- -5'
18162 5' -61.2 NC_004680.1 + 29168 0.68 0.315476
Target:  5'- uGCCGCAUGAUCUUGGaaucggUGCgCGAa- -3'
miRNA:   3'- gCGGCGUACUAGGACCg-----GCGgGCUgc -5'
18162 5' -61.2 NC_004680.1 + 52728 0.68 0.315476
Target:  5'- aGCCGUgacccuuuccGUGAUUCUcGCCGCCCaGGCc -3'
miRNA:   3'- gCGGCG----------UACUAGGAcCGGCGGG-CUGc -5'
18162 5' -61.2 NC_004680.1 + 57317 0.68 0.315476
Target:  5'- uGaCCGCGguaagGAUCCacGCCGgCCGGCGa -3'
miRNA:   3'- gC-GGCGUa----CUAGGacCGGCgGGCUGC- -5'
18162 5' -61.2 NC_004680.1 + 11253 0.68 0.322933
Target:  5'- uGCCGCcgGGgauUCCUGGCaUGCCgcagGACGc -3'
miRNA:   3'- gCGGCGuaCU---AGGACCG-GCGGg---CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.