Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18176 | 5' | -55.8 | NC_004680.1 | + | 622 | 0.66 | 0.669894 |
Target: 5'- -cCCCAGguGUGCGAcuucauugaggaucGGAUgguguUCGGCCc -3' miRNA: 3'- aaGGGUCguCGCGUU--------------CCUGu----AGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 2875 | 0.72 | 0.348125 |
Target: 5'- gUCaCCAGCcuGCGCcGGGACGaCGACUg -3' miRNA: 3'- aAG-GGUCGu-CGCGuUCCUGUaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 6347 | 0.66 | 0.673187 |
Target: 5'- -aCCCGGCGucacCGUAAGGugAcgugcagCGACCg -3' miRNA: 3'- aaGGGUCGUc---GCGUUCCugUa------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 8747 | 0.67 | 0.64014 |
Target: 5'- aUCCCggAGCAGacCGUgAAGGACcgCGACg -3' miRNA: 3'- aAGGG--UCGUC--GCG-UUCCUGuaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 11145 | 0.76 | 0.179962 |
Target: 5'- -gCCCGGCAGCaggaugccaucgacgGCGGGaGACAUCGACg -3' miRNA: 3'- aaGGGUCGUCG---------------CGUUC-CUGUAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 12310 | 0.66 | 0.673187 |
Target: 5'- --aCCAGUGGgGCGGGGGCGaCcGCCg -3' miRNA: 3'- aagGGUCGUCgCGUUCCUGUaGcUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 12854 | 1.08 | 0.000936 |
Target: 5'- cUUCCCAGCAGCGCAAGGACAUCGACCc -3' miRNA: 3'- -AAGGGUCGUCGCGUUCCUGUAGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 16281 | 0.66 | 0.651177 |
Target: 5'- -gCCCAGUAuGCGUuGGGGCGU-GACg -3' miRNA: 3'- aaGGGUCGU-CGCGuUCCUGUAgCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 16669 | 0.68 | 0.574106 |
Target: 5'- gUCCCAGCGGgGUucaAAGGcCA-CGACa -3' miRNA: 3'- aAGGGUCGUCgCG---UUCCuGUaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 17883 | 0.72 | 0.356571 |
Target: 5'- -gCgCAGCGGCGCAAGGAUgauGUUcACCa -3' miRNA: 3'- aaGgGUCGUCGCGUUCCUG---UAGcUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 18606 | 0.68 | 0.552384 |
Target: 5'- cUUCCCGGUguuGGUGC--GGGCAUCGcggACCu -3' miRNA: 3'- -AAGGGUCG---UCGCGuuCCUGUAGC---UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 20883 | 0.67 | 0.64014 |
Target: 5'- --gCCGGCAGCGuCGAGGAaguUCGGg- -3' miRNA: 3'- aagGGUCGUCGC-GUUCCUgu-AGCUgg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 23632 | 0.68 | 0.574106 |
Target: 5'- -aCCCggaAGCAcCGCGAGGGCAgugUUGAUCa -3' miRNA: 3'- aaGGG---UCGUcGCGUUCCUGU---AGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 25053 | 0.73 | 0.29305 |
Target: 5'- gUCCCGGUGGCGguGGGGCcgGUCGGg- -3' miRNA: 3'- aAGGGUCGUCGCguUCCUG--UAGCUgg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 25089 | 0.66 | 0.684139 |
Target: 5'- -cCCCAcuaacuacGCGGC-CGGGGACggUGGCCu -3' miRNA: 3'- aaGGGU--------CGUCGcGUUCCUGuaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 27543 | 0.67 | 0.596018 |
Target: 5'- aUCCCgcgccaGGCAGCGCG-GGACc-CGGCg -3' miRNA: 3'- aAGGG------UCGUCGCGUuCCUGuaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 31045 | 0.66 | 0.673187 |
Target: 5'- --aCCAGCAGUGCGAcGAuCAUccccgcgaCGACCg -3' miRNA: 3'- aagGGUCGUCGCGUUcCU-GUA--------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 33414 | 0.67 | 0.596018 |
Target: 5'- -gCUCGGCGGUGCGGGaGGCccCGAUCu -3' miRNA: 3'- aaGGGUCGUCGCGUUC-CUGuaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 34079 | 0.67 | 0.589429 |
Target: 5'- -cCCCAGCAGCGC--GGAacacgccacgccacaCGUCGuaguCCg -3' miRNA: 3'- aaGGGUCGUCGCGuuCCU---------------GUAGCu---GG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 34639 | 0.67 | 0.585042 |
Target: 5'- -aCCCacaacaugGGCGGCGCAGacGGAUA-CGACUg -3' miRNA: 3'- aaGGG--------UCGUCGCGUU--CCUGUaGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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