miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18176 5' -55.8 NC_004680.1 + 12854 1.08 0.000936
Target:  5'- cUUCCCAGCAGCGCAAGGACAUCGACCc -3'
miRNA:   3'- -AAGGGUCGUCGCGUUCCUGUAGCUGG- -5'
18176 5' -55.8 NC_004680.1 + 37910 0.66 0.684139
Target:  5'- --aCCGGCGuGCGCcuGGACuGUCG-CCg -3'
miRNA:   3'- aagGGUCGU-CGCGuuCCUG-UAGCuGG- -5'
18176 5' -55.8 NC_004680.1 + 25089 0.66 0.684139
Target:  5'- -cCCCAcuaacuacGCGGC-CGGGGACggUGGCCu -3'
miRNA:   3'- aaGGGU--------CGUCGcGUUCCUGuaGCUGG- -5'
18176 5' -55.8 NC_004680.1 + 36158 0.66 0.673187
Target:  5'- aUCCCAuGCc-CGCAGGGcgGCGagGACCg -3'
miRNA:   3'- aAGGGU-CGucGCGUUCC--UGUagCUGG- -5'
18176 5' -55.8 NC_004680.1 + 12310 0.66 0.673187
Target:  5'- --aCCAGUGGgGCGGGGGCGaCcGCCg -3'
miRNA:   3'- aagGGUCGUCgCGUUCCUGUaGcUGG- -5'
18176 5' -55.8 NC_004680.1 + 622 0.66 0.669894
Target:  5'- -cCCCAGguGUGCGAcuucauugaggaucGGAUgguguUCGGCCc -3'
miRNA:   3'- aaGGGUCguCGCGUU--------------CCUGu----AGCUGG- -5'
18176 5' -55.8 NC_004680.1 + 16281 0.66 0.651177
Target:  5'- -gCCCAGUAuGCGUuGGGGCGU-GACg -3'
miRNA:   3'- aaGGGUCGU-CGCGuUCCUGUAgCUGg -5'
18176 5' -55.8 NC_004680.1 + 8747 0.67 0.64014
Target:  5'- aUCCCggAGCAGacCGUgAAGGACcgCGACg -3'
miRNA:   3'- aAGGG--UCGUC--GCG-UUCCUGuaGCUGg -5'
18176 5' -55.8 NC_004680.1 + 18606 0.68 0.552384
Target:  5'- cUUCCCGGUguuGGUGC--GGGCAUCGcggACCu -3'
miRNA:   3'- -AAGGGUCG---UCGCGuuCCUGUAGC---UGG- -5'
18176 5' -55.8 NC_004680.1 + 48806 0.72 0.315004
Target:  5'- gUCCCAGCaucggaaagugguGGCGCAGGcGAuCcgUGACCa -3'
miRNA:   3'- aAGGGUCG-------------UCGCGUUC-CU-GuaGCUGG- -5'
18176 5' -55.8 NC_004680.1 + 25053 0.73 0.29305
Target:  5'- gUCCCGGUGGCGguGGGGCcgGUCGGg- -3'
miRNA:   3'- aAGGGUCGUCGCguUCCUG--UAGCUgg -5'
18176 5' -55.8 NC_004680.1 + 53708 0.78 0.142485
Target:  5'- --aCCAGUguguugaagucguGGUGUGAGGACAUCGACCg -3'
miRNA:   3'- aagGGUCG-------------UCGCGUUCCUGUAGCUGG- -5'
18176 5' -55.8 NC_004680.1 + 53642 0.67 0.629096
Target:  5'- gUCCUggAGgAGUaCGAGGGCGUCGGuCCa -3'
miRNA:   3'- aAGGG--UCgUCGcGUUCCUGUAGCU-GG- -5'
18176 5' -55.8 NC_004680.1 + 41398 0.67 0.629096
Target:  5'- aUgCCGGCGGCgaucaGCAGcGGCAUCGuCCa -3'
miRNA:   3'- aAgGGUCGUCG-----CGUUcCUGUAGCuGG- -5'
18176 5' -55.8 NC_004680.1 + 20883 0.67 0.64014
Target:  5'- --gCCGGCAGCGuCGAGGAaguUCGGg- -3'
miRNA:   3'- aagGGUCGUCGC-GUUCCUgu-AGCUgg -5'
18176 5' -55.8 NC_004680.1 + 43561 0.66 0.651177
Target:  5'- gUCCCacguguAGCGGUGCcAGGACcgGUUGugCc -3'
miRNA:   3'- aAGGG------UCGUCGCGuUCCUG--UAGCugG- -5'
18176 5' -55.8 NC_004680.1 + 41832 0.66 0.651177
Target:  5'- -gUCCAGCAGaUGCGGcGGGCgggGUCGGCg -3'
miRNA:   3'- aaGGGUCGUC-GCGUU-CCUG---UAGCUGg -5'
18176 5' -55.8 NC_004680.1 + 31045 0.66 0.673187
Target:  5'- --aCCAGCAGUGCGAcGAuCAUccccgcgaCGACCg -3'
miRNA:   3'- aagGGUCGUCGCGUUcCU-GUA--------GCUGG- -5'
18176 5' -55.8 NC_004680.1 + 6347 0.66 0.673187
Target:  5'- -aCCCGGCGucacCGUAAGGugAcgugcagCGACCg -3'
miRNA:   3'- aaGGGUCGUc---GCGUUCCugUa------GCUGG- -5'
18176 5' -55.8 NC_004680.1 + 11145 0.76 0.179962
Target:  5'- -gCCCGGCAGCaggaugccaucgacgGCGGGaGACAUCGACg -3'
miRNA:   3'- aaGGGUCGUCG---------------CGUUC-CUGUAGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.