miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18177 5' -57.4 NC_004680.1 + 25188 0.66 0.626548
Target:  5'- gGugCGGACgGCUGCAacaAGAucgAGUGGg -3'
miRNA:   3'- -CugGCCUGgCGGCGUgg-UCU---UUACCa -5'
18177 5' -57.4 NC_004680.1 + 11860 0.66 0.615718
Target:  5'- aGAgCGGucauggacacACCgGCCGCACCGGcaGAcgGGUa -3'
miRNA:   3'- -CUgGCC----------UGG-CGGCGUGGUC--UUuaCCA- -5'
18177 5' -57.4 NC_004680.1 + 17175 0.66 0.615718
Target:  5'- cGCgGGGCCGCCaaucgaacggcuGCGCCGGGAucgacaccUGGg -3'
miRNA:   3'- cUGgCCUGGCGG------------CGUGGUCUUu-------ACCa -5'
18177 5' -57.4 NC_004680.1 + 18194 0.66 0.604903
Target:  5'- aACCGGAUCGgCGCGCCGGu------ -3'
miRNA:   3'- cUGGCCUGGCgGCGUGGUCuuuacca -5'
18177 5' -57.4 NC_004680.1 + 14272 0.66 0.594109
Target:  5'- cGCCGGcggauauCUuCCGCACCGGGGcUGGUg -3'
miRNA:   3'- cUGGCCu------GGcGGCGUGGUCUUuACCA- -5'
18177 5' -57.4 NC_004680.1 + 24857 0.66 0.583348
Target:  5'- --gCGGuGCCGCCGCugcCCGGAGAUcccgaGGUg -3'
miRNA:   3'- cugGCC-UGGCGGCGu--GGUCUUUA-----CCA- -5'
18177 5' -57.4 NC_004680.1 + 43727 0.67 0.519866
Target:  5'- -cCUGGACCGCgaaGCGCUGGAGuugaaccuggauGUGGUg -3'
miRNA:   3'- cuGGCCUGGCGg--CGUGGUCUU------------UACCA- -5'
18177 5' -57.4 NC_004680.1 + 34563 0.68 0.509533
Target:  5'- cGCCGcccauguuguGGgUGCCGuCGCCGGGGAUGGUg -3'
miRNA:   3'- cUGGC----------CUgGCGGC-GUGGUCUUUACCA- -5'
18177 5' -57.4 NC_004680.1 + 12326 0.68 0.498266
Target:  5'- cGACCGccgcuucGGgUGCCGCGCCGGGGAgucccgcgucUGGUg -3'
miRNA:   3'- -CUGGC-------CUgGCGGCGUGGUCUUU----------ACCA- -5'
18177 5' -57.4 NC_004680.1 + 42718 0.68 0.489133
Target:  5'- --gCGGGCCGCCuGgGCCAGGacauguucaggGAUGGg -3'
miRNA:   3'- cugGCCUGGCGG-CgUGGUCU-----------UUACCa -5'
18177 5' -57.4 NC_004680.1 + 5438 0.68 0.489133
Target:  5'- uGGCCaGGGCCGUgGCACCcGcAcgGGUg -3'
miRNA:   3'- -CUGG-CCUGGCGgCGUGGuCuUuaCCA- -5'
18177 5' -57.4 NC_004680.1 + 42073 0.69 0.449541
Target:  5'- aGACCuGcucgaaugaguGCCGCCGgGCgCAGAGGUGGg -3'
miRNA:   3'- -CUGGcC-----------UGGCGGCgUG-GUCUUUACCa -5'
18177 5' -57.4 NC_004680.1 + 12773 0.69 0.439921
Target:  5'- cGACCuGGCCGCCGUACUc--GAUGGc -3'
miRNA:   3'- -CUGGcCUGGCGGCGUGGucuUUACCa -5'
18177 5' -57.4 NC_004680.1 + 21212 0.69 0.430418
Target:  5'- uGGCCGGuGCCGCCGgaGCCGGuggauauUGGg -3'
miRNA:   3'- -CUGGCC-UGGCGGCg-UGGUCuuu----ACCa -5'
18177 5' -57.4 NC_004680.1 + 12458 0.7 0.388315
Target:  5'- aGCCGGACCcggcaguggacccgcGCCaGCACCAGAcGcgGGa -3'
miRNA:   3'- cUGGCCUGG---------------CGG-CGUGGUCU-UuaCCa -5'
18177 5' -57.4 NC_004680.1 + 37151 0.7 0.384784
Target:  5'- aACCuGGCgGCUGCcaGCCGGGAGUGGg -3'
miRNA:   3'- cUGGcCUGgCGGCG--UGGUCUUUACCa -5'
18177 5' -57.4 NC_004680.1 + 3522 0.7 0.384784
Target:  5'- cGCCGG-CCGCCuuaGCCAGAGAUGc- -3'
miRNA:   3'- cUGGCCuGGCGGcg-UGGUCUUUACca -5'
18177 5' -57.4 NC_004680.1 + 21972 0.7 0.383904
Target:  5'- -uUCGGACCGCCGUAgcggaaucccaccUCAGGaguGAUGGUg -3'
miRNA:   3'- cuGGCCUGGCGGCGU-------------GGUCU---UUACCA- -5'
18177 5' -57.4 NC_004680.1 + 16745 0.72 0.27504
Target:  5'- cGGCCgcaacuggaGGAUCGCCGCGCCAGcAGUcGGa -3'
miRNA:   3'- -CUGG---------CCUGGCGGCGUGGUCuUUA-CCa -5'
18177 5' -57.4 NC_004680.1 + 508 0.73 0.255051
Target:  5'- cGCCGGugUGCC-CACCGGAGccUGGUg -3'
miRNA:   3'- cUGGCCugGCGGcGUGGUCUUu-ACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.