miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18201 5' -56.4 NC_004680.1 + 53096 0.66 0.67786
Target:  5'- gGCUGCGUGGauCGCCGcguGGGacAGCCu -3'
miRNA:   3'- aCGACGCGUC--GUGGCau-CCCacUUGG- -5'
18201 5' -56.4 NC_004680.1 + 12471 0.66 0.666993
Target:  5'- gGCUGcCGguGCGCCacaaagccuGUucaccGGUGGGCCg -3'
miRNA:   3'- aCGAC-GCguCGUGG---------CAuc---CCACUUGG- -5'
18201 5' -56.4 NC_004680.1 + 58778 0.66 0.663727
Target:  5'- aUGCUGCGCAccuccgccaguGCAUUGguguagcuacggguuGGG-GAGCCg -3'
miRNA:   3'- -ACGACGCGU-----------CGUGGCau-------------CCCaCUUGG- -5'
18201 5' -56.4 NC_004680.1 + 33994 0.66 0.656095
Target:  5'- gGCgugGCGUguuccGCGCUGcUGGGGUGAucgguCCa -3'
miRNA:   3'- aCGa--CGCGu----CGUGGC-AUCCCACUu----GG- -5'
18201 5' -56.4 NC_004680.1 + 39646 0.66 0.655004
Target:  5'- cGgaGCGCcgcagggAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- aCgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 19214 0.66 0.645174
Target:  5'- cGCUcGgGCGauGUGCCGU-GGGUGAguaucGCCg -3'
miRNA:   3'- aCGA-CgCGU--CGUGGCAuCCCACU-----UGG- -5'
18201 5' -56.4 NC_004680.1 + 41093 0.66 0.638616
Target:  5'- gGCaaagGCGCGGCG-CGUGGuGGUGccauguguggagguuGACCg -3'
miRNA:   3'- aCGa---CGCGUCGUgGCAUC-CCAC---------------UUGG- -5'
18201 5' -56.4 NC_004680.1 + 39789 0.67 0.61129
Target:  5'- aUGgaGCGCcgcauggAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- -ACgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 39753 0.67 0.61129
Target:  5'- aUGgaGCGCcgcauggAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- -ACgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 39609 0.67 0.61129
Target:  5'- aUGgaGCGCcgcauggAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- -ACgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 39573 0.67 0.61129
Target:  5'- aUGgaGCGCcgcauggAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- -ACgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 39717 0.67 0.61129
Target:  5'- aUGgaGCGCcgcagagAGCGCCGcAGGGaGcGCCg -3'
miRNA:   3'- -ACgaCGCG-------UCGUGGCaUCCCaCuUGG- -5'
18201 5' -56.4 NC_004680.1 + 2498 0.67 0.601473
Target:  5'- uUGCggGCGCGGCGCauuuGgcGGGauAACCg -3'
miRNA:   3'- -ACGa-CGCGUCGUGg---CauCCCacUUGG- -5'
18201 5' -56.4 NC_004680.1 + 42689 0.67 0.590589
Target:  5'- aUGC--CGCGGCgACgGUGGGGUgcagucGAACCg -3'
miRNA:   3'- -ACGacGCGUCG-UGgCAUCCCA------CUUGG- -5'
18201 5' -56.4 NC_004680.1 + 12657 0.67 0.568934
Target:  5'- gGCcGCGCAG-ACCG--GGGUGAAgCu -3'
miRNA:   3'- aCGaCGCGUCgUGGCauCCCACUUgG- -5'
18201 5' -56.4 NC_004680.1 + 26756 0.68 0.558179
Target:  5'- gGgUGCGUAGCggGCCuucGGGGcgGAACCa -3'
miRNA:   3'- aCgACGCGUCG--UGGca-UCCCa-CUUGG- -5'
18201 5' -56.4 NC_004680.1 + 29064 0.68 0.547482
Target:  5'- gUGCUGUcaguguccgGCGGCGCCGcAGuGGUGucACUg -3'
miRNA:   3'- -ACGACG---------CGUCGUGGCaUC-CCACu-UGG- -5'
18201 5' -56.4 NC_004680.1 + 31540 0.68 0.53685
Target:  5'- cUGCUGUGCAGCAcaaaauCCGcacuGGUGucGCCa -3'
miRNA:   3'- -ACGACGCGUCGU------GGCauc-CCACu-UGG- -5'
18201 5' -56.4 NC_004680.1 + 34150 0.68 0.515811
Target:  5'- cGCUgcGCGCAGCAaugUCGaGGuGGUGuGCCg -3'
miRNA:   3'- aCGA--CGCGUCGU---GGCaUC-CCACuUGG- -5'
18201 5' -56.4 NC_004680.1 + 28222 0.68 0.505417
Target:  5'- --gUGUGCGGCACCGguguucccuGGUGGAUCg -3'
miRNA:   3'- acgACGCGUCGUGGCauc------CCACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.