miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18213 3' -62.1 NC_004680.1 + 11124 0.67 0.363577
Target:  5'- gACGGCgggagacaucGACGgGGCcgggGGGCCGgcugGCCCg -3'
miRNA:   3'- -UGCCGa---------CUGCgUCG----CCCGGCag--UGGG- -5'
18213 3' -62.1 NC_004680.1 + 22782 0.66 0.402435
Target:  5'- gGCGGUggcguucagguagGAgGCGGCGacGGCCccCACCCa -3'
miRNA:   3'- -UGCCGa------------CUgCGUCGC--CCGGcaGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 36106 0.66 0.405937
Target:  5'- uGCGGCgaaACGCGcGCGuGGCC-UCGgCCg -3'
miRNA:   3'- -UGCCGac-UGCGU-CGC-CCGGcAGUgGG- -5'
18213 3' -62.1 NC_004680.1 + 5448 0.68 0.288415
Target:  5'- uCGGUgucgGugGCca-GGGCCGUggCACCCg -3'
miRNA:   3'- uGCCGa---CugCGucgCCCGGCA--GUGGG- -5'
18213 3' -62.1 NC_004680.1 + 12511 0.68 0.302413
Target:  5'- cCGGUgGugGgCAGCgGGGCUGgguuaggCGCCCa -3'
miRNA:   3'- uGCCGaCugC-GUCG-CCCGGCa------GUGGG- -5'
18213 3' -62.1 NC_004680.1 + 23519 0.67 0.331961
Target:  5'- gGCGGcCUGcACGauCAGCGuGCCGUCACg- -3'
miRNA:   3'- -UGCC-GAC-UGC--GUCGCcCGGCAGUGgg -5'
18213 3' -62.1 NC_004680.1 + 42668 0.71 0.175448
Target:  5'- cGCGGCUGAUGCcGU--GCCG-CACCCu -3'
miRNA:   3'- -UGCCGACUGCGuCGccCGGCaGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 19606 0.71 0.194346
Target:  5'- gUGGUguuaccAC-CGGCGGcGCCGUCACCCg -3'
miRNA:   3'- uGCCGac----UGcGUCGCC-CGGCAGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 11185 0.69 0.268382
Target:  5'- cGCGGCguucugcuugGGCGCcG-GGGCCGcCACCa -3'
miRNA:   3'- -UGCCGa---------CUGCGuCgCCCGGCaGUGGg -5'
18213 3' -62.1 NC_004680.1 + 56751 0.69 0.274932
Target:  5'- gGCGGgccaCUGAUGUGGCGGGgaCGUCGCa- -3'
miRNA:   3'- -UGCC----GACUGCGUCGCCCg-GCAGUGgg -5'
18213 3' -62.1 NC_004680.1 + 28340 0.68 0.295349
Target:  5'- gACGGCgcgGGCGguGUcggcgucgGGGCCGaucCACCa -3'
miRNA:   3'- -UGCCGa--CUGCguCG--------CCCGGCa--GUGGg -5'
18213 3' -62.1 NC_004680.1 + 45945 0.67 0.363577
Target:  5'- cCGGUgacGAUGUAGUGGGgccaCGUC-CCCg -3'
miRNA:   3'- uGCCGa--CUGCGUCGCCCg---GCAGuGGG- -5'
18213 3' -62.1 NC_004680.1 + 58367 0.71 0.204447
Target:  5'- gGCGGCUuuggcGAUGCGuuguugguauucGCgGGGCCGuucUCGCCCg -3'
miRNA:   3'- -UGCCGA-----CUGCGU------------CG-CCCGGC---AGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 31574 0.67 0.35548
Target:  5'- -aGGCcGACGUGcGCaGGaGCCGUCACUa -3'
miRNA:   3'- ugCCGaCUGCGU-CG-CC-CGGCAGUGGg -5'
18213 3' -62.1 NC_004680.1 + 40135 0.68 0.28161
Target:  5'- uUGGUUGuguguuucCGguGUuaGGGCCGUCGCCUc -3'
miRNA:   3'- uGCCGACu-------GCguCG--CCCGGCAGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 55940 0.71 0.199341
Target:  5'- gAUGGUUGuCGCGGCGGGCgucuCGUCAaaggugagugUCCa -3'
miRNA:   3'- -UGCCGACuGCGUCGCCCG----GCAGU----------GGG- -5'
18213 3' -62.1 NC_004680.1 + 21657 0.74 0.115313
Target:  5'- cCGGCUGACuGUGcGCGGuGCCGUUGCCg -3'
miRNA:   3'- uGCCGACUG-CGU-CGCC-CGGCAGUGGg -5'
18213 3' -62.1 NC_004680.1 + 26759 0.67 0.331961
Target:  5'- cGCGGgUG-CGUAGCGGGCCuUCggggcggaACCa -3'
miRNA:   3'- -UGCCgACuGCGUCGCCCGGcAG--------UGGg -5'
18213 3' -62.1 NC_004680.1 + 56053 0.66 0.391189
Target:  5'- uGCGGCUGggcagcguuggaucgGCGUAGUucgagucGGGCgcgugcugCGUCAUCCa -3'
miRNA:   3'- -UGCCGAC---------------UGCGUCG-------CCCG--------GCAGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 12449 0.67 0.347512
Target:  5'- cCGGUgGugGCGGCGGcccgauggcuGCCGgugCGCCa -3'
miRNA:   3'- uGCCGaCugCGUCGCC----------CGGCa--GUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.