miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18227 5' -54.5 NC_004680.1 + 4020 0.67 0.734704
Target:  5'- -cCGCCGCGuCUUGACcgGCaACGAGaacuGCg -3'
miRNA:   3'- caGUGGCGC-GAACUGa-UGcUGCUC----CG- -5'
18227 5' -54.5 NC_004680.1 + 8194 0.66 0.799274
Target:  5'- uUUACCGCGCUgaggGuuacccggcggugaaGCUggACGACcAGGCg -3'
miRNA:   3'- cAGUGGCGCGAa---C---------------UGA--UGCUGcUCCG- -5'
18227 5' -54.5 NC_004680.1 + 9659 0.66 0.785657
Target:  5'- aGUUGUCGCGUgaggUUGAUcgUGCGACGaAGGCu -3'
miRNA:   3'- -CAGUGGCGCG----AACUG--AUGCUGC-UCCG- -5'
18227 5' -54.5 NC_004680.1 + 12983 0.68 0.692034
Target:  5'- uGUCGCCcUGCUUGGgcuggaccuggcCUugGGCGGcGGCu -3'
miRNA:   3'- -CAGUGGcGCGAACU------------GAugCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 14540 0.68 0.636385
Target:  5'- uUCACCGC-CUguugGAagauguucagcucCUGCGGCGAcGGCg -3'
miRNA:   3'- cAGUGGCGcGAa---CU-------------GAUGCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 18033 0.68 0.659389
Target:  5'- aUCGCCGCuGCgaGAaUGCGACG-GGUc -3'
miRNA:   3'- cAGUGGCG-CGaaCUgAUGCUGCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 19272 0.67 0.724162
Target:  5'- gGUCACCGaCGcCUUcACaauCGACGAcGGCg -3'
miRNA:   3'- -CAGUGGC-GC-GAAcUGau-GCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 21446 0.66 0.795417
Target:  5'- -cCGCCgGCGCcgccauacgUGGC--CGACGGGGCu -3'
miRNA:   3'- caGUGG-CGCGa--------ACUGauGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 21636 0.67 0.713528
Target:  5'- cGUUGCCGUGCgcGA--ACGugGGGGUu -3'
miRNA:   3'- -CAGUGGCGCGaaCUgaUGCugCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 21865 0.67 0.734704
Target:  5'- uUCACCGCcauGCcagcccacuuaUUcGGCcGCGACGAGGUg -3'
miRNA:   3'- cAGUGGCG---CG-----------AA-CUGaUGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 23075 0.66 0.785657
Target:  5'- uUCACacugGCGCcgcUGGC-ACGAcCGGGGCg -3'
miRNA:   3'- cAGUGg---CGCGa--ACUGaUGCU-GCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 25432 0.69 0.615555
Target:  5'- -cCGCCGaGCUUGACgccgaacugGCGgcccucgucuACGAGGCg -3'
miRNA:   3'- caGUGGCgCGAACUGa--------UGC----------UGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 25727 0.72 0.447522
Target:  5'- uGUCGCaGUGUUUGGgUGCGGCGucGGCg -3'
miRNA:   3'- -CAGUGgCGCGAACUgAUGCUGCu-CCG- -5'
18227 5' -54.5 NC_004680.1 + 26948 0.66 0.795417
Target:  5'- cGUCACUGCGg--GAgU-CGugGGGGUa -3'
miRNA:   3'- -CAGUGGCGCgaaCUgAuGCugCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 27874 0.66 0.755472
Target:  5'- --aGCCGCGCUgcUGACgcaaggucuccACGGCGAGuucGCg -3'
miRNA:   3'- cagUGGCGCGA--ACUGa----------UGCUGCUC---CG- -5'
18227 5' -54.5 NC_004680.1 + 29759 0.71 0.497775
Target:  5'- cGUCGCCGCGUUUcgcgGACUcCaACGAGGa -3'
miRNA:   3'- -CAGUGGCGCGAA----CUGAuGcUGCUCCg -5'
18227 5' -54.5 NC_004680.1 + 33503 0.71 0.477352
Target:  5'- -aCACCGCGUUccagGugUGCGACGAaccagaugcGGUg -3'
miRNA:   3'- caGUGGCGCGAa---CugAUGCUGCU---------CCG- -5'
18227 5' -54.5 NC_004680.1 + 33970 0.67 0.734704
Target:  5'- aUC-CC-CGUUcgGACUACGACGuguGGCg -3'
miRNA:   3'- cAGuGGcGCGAa-CUGAUGCUGCu--CCG- -5'
18227 5' -54.5 NC_004680.1 + 34781 0.7 0.561145
Target:  5'- gGUCACCGCGCUcgcUGuGCUcgcCGuCGuAGGCa -3'
miRNA:   3'- -CAGUGGCGCGA---AC-UGAu--GCuGC-UCCG- -5'
18227 5' -54.5 NC_004680.1 + 36935 0.74 0.339601
Target:  5'- aGUUGCCGCGCga-ACUGCGAUGcGGUg -3'
miRNA:   3'- -CAGUGGCGCGaacUGAUGCUGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.