miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18227 5' -54.5 NC_004680.1 + 48987 1.13 0.000793
Target:  5'- aGUCACCGCGCUUGACUACGACGAGGCa -3'
miRNA:   3'- -CAGUGGCGCGAACUGAUGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 40491 0.66 0.755472
Target:  5'- cGUCGUgGCGUggGGCUcugcgcACGuCGAGGCg -3'
miRNA:   3'- -CAGUGgCGCGaaCUGA------UGCuGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 40659 0.66 0.755472
Target:  5'- cGUCGUgGCGUggGGCUcugcgcACGuCGAGGCg -3'
miRNA:   3'- -CAGUGgCGCGaaCUGA------UGCuGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 49795 0.66 0.765673
Target:  5'- cUCGCUGCGCUgGAUacCGGgGAGGa -3'
miRNA:   3'- cAGUGGCGCGAaCUGauGCUgCUCCg -5'
18227 5' -54.5 NC_004680.1 + 56060 0.66 0.765673
Target:  5'- -aCGCCGacuGCccaGACUGCGGCGAauGGUa -3'
miRNA:   3'- caGUGGCg--CGaa-CUGAUGCUGCU--CCG- -5'
18227 5' -54.5 NC_004680.1 + 49227 0.66 0.775739
Target:  5'- cGUUGCUGCGgUugUGGCUACaGAgGAGGa -3'
miRNA:   3'- -CAGUGGCGCgA--ACUGAUG-CUgCUCCg -5'
18227 5' -54.5 NC_004680.1 + 9659 0.66 0.785657
Target:  5'- aGUUGUCGCGUgaggUUGAUcgUGCGACGaAGGCu -3'
miRNA:   3'- -CAGUGGCGCG----AACUG--AUGCUGC-UCCG- -5'
18227 5' -54.5 NC_004680.1 + 23075 0.66 0.785657
Target:  5'- uUCACacugGCGCcgcUGGC-ACGAcCGGGGCg -3'
miRNA:   3'- cAGUGg---CGCGa--ACUGaUGCU-GCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 8194 0.66 0.799274
Target:  5'- uUUACCGCGCUgaggGuuacccggcggugaaGCUggACGACcAGGCg -3'
miRNA:   3'- cAGUGGCGCGAa---C---------------UGA--UGCUGcUCCG- -5'
18227 5' -54.5 NC_004680.1 + 4020 0.67 0.734704
Target:  5'- -cCGCCGCGuCUUGACcgGCaACGAGaacuGCg -3'
miRNA:   3'- caGUGGCGC-GAACUGa-UGcUGCUC----CG- -5'
18227 5' -54.5 NC_004680.1 + 38943 0.67 0.734704
Target:  5'- -aCACCGCcacuGCggagGaACUcgccGCGAUGAGGCa -3'
miRNA:   3'- caGUGGCG----CGaa--C-UGA----UGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 49389 0.76 0.265056
Target:  5'- -gCGCCGuUGCUUGGCUGCGAUu-GGCg -3'
miRNA:   3'- caGUGGC-GCGAACUGAUGCUGcuCCG- -5'
18227 5' -54.5 NC_004680.1 + 36935 0.74 0.339601
Target:  5'- aGUUGCCGCGCga-ACUGCGAUGcGGUg -3'
miRNA:   3'- -CAGUGGCGCGaacUGAUGCUGCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 33503 0.71 0.477352
Target:  5'- -aCACCGCGUUccagGugUGCGACGAaccagaugcGGUg -3'
miRNA:   3'- caGUGGCGCGAa---CugAUGCUGCU---------CCG- -5'
18227 5' -54.5 NC_004680.1 + 50126 0.71 0.477352
Target:  5'- --gGCUGCGCUggccGACUACGAaGuGGCg -3'
miRNA:   3'- cagUGGCGCGAa---CUGAUGCUgCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 37878 0.71 0.508132
Target:  5'- gGUCACCG-GCaUGACUGCcGcCGAGGa -3'
miRNA:   3'- -CAGUGGCgCGaACUGAUG-CuGCUCCg -5'
18227 5' -54.5 NC_004680.1 + 47841 0.71 0.508132
Target:  5'- -gCGCCG-GC-UGGCUGCGGCGGuuGGCc -3'
miRNA:   3'- caGUGGCgCGaACUGAUGCUGCU--CCG- -5'
18227 5' -54.5 NC_004680.1 + 52303 0.68 0.659389
Target:  5'- --gGCCGCGUUcGAC-ACGcucauCGAGGCa -3'
miRNA:   3'- cagUGGCGCGAaCUGaUGCu----GCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 33970 0.67 0.734704
Target:  5'- aUC-CC-CGUUcgGACUACGACGuguGGCg -3'
miRNA:   3'- cAGuGGcGCGAa-CUGAUGCUGCu--CCG- -5'
18227 5' -54.5 NC_004680.1 + 25727 0.72 0.447522
Target:  5'- uGUCGCaGUGUUUGGgUGCGGCGucGGCg -3'
miRNA:   3'- -CAGUGgCGCGAACUgAUGCUGCu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.