Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18231 | 3' | -62.8 | NC_004680.1 | + | 39866 | 0.71 | 0.147207 |
Target: 5'- gCGCCGCAGAGa-GCGCC-GCAuggagcGCCGc -3' miRNA: 3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 19376 | 0.71 | 0.159255 |
Target: 5'- gGUgCGCAGGGCUGgGCCuuggguaucaacGGuCAGGCCGg -3' miRNA: 3'- gCG-GCGUCUCGACgCGG------------CC-GUUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 9719 | 0.71 | 0.163465 |
Target: 5'- uCGCgGCGaauGgUGUGUCGGCGGGCCGg -3' miRNA: 3'- -GCGgCGUcu-CgACGCGGCCGUUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 39650 | 0.71 | 0.172186 |
Target: 5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3' miRNA: 3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 39806 | 0.71 | 0.172186 |
Target: 5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3' miRNA: 3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 39590 | 0.7 | 0.186046 |
Target: 5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3' miRNA: 3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 39686 | 0.7 | 0.186046 |
Target: 5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3' miRNA: 3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 25727 | 0.67 | 0.284182 |
Target: 5'- uGUCGCAGuguuuggguGCgGCGUCGGCGAcggcggggauGCCGa -3' miRNA: 3'- gCGGCGUCu--------CGaCGCGGCCGUU----------CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 59172 | 0.67 | 0.27742 |
Target: 5'- uCGCCGguGuugGGUUGUGCuUGGC-GGCCGc -3' miRNA: 3'- -GCGGCguC---UCGACGCG-GCCGuUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 56788 | 0.68 | 0.270786 |
Target: 5'- uGCCGguaggcguUGGGGCUGUGCUcuuuggcguacuGGCGGGCCa -3' miRNA: 3'- gCGGC--------GUCUCGACGCGG------------CCGUUCGGc -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 42758 | 0.68 | 0.264281 |
Target: 5'- uCGCCGCGGcauccGUguaggagGCGCCgucgucgagcaGGCGGGCCGc -3' miRNA: 3'- -GCGGCGUCu----CGa------CGCGG-----------CCGUUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 56911 | 0.68 | 0.251033 |
Target: 5'- aCGCCGaauucUAGGGCgGUGCCGGUgggguucAGGCUGa -3' miRNA: 3'- -GCGGC-----GUCUCGaCGCGGCCG-------UUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 51572 | 0.67 | 0.291074 |
Target: 5'- uCGCCGCAGaAGUaugUGCGCUccuCGGGCCa -3' miRNA: 3'- -GCGGCGUC-UCG---ACGCGGcc-GUUCGGc -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 56143 | 0.67 | 0.312534 |
Target: 5'- uCGCCGCAGucuggGCaGUCGGCGucGCCGc -3' miRNA: 3'- -GCGGCGUCucga-CG-CGGCCGUu-CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 25911 | 0.67 | 0.319949 |
Target: 5'- uCGCCGUGGuGGCgGcCGCCGccGCAGuGCCGa -3' miRNA: 3'- -GCGGCGUC-UCGaC-GCGGC--CGUU-CGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 11103 | 0.66 | 0.327495 |
Target: 5'- gGCCGgGGGGCcG-GCUGGCccgauggggAGGCCGg -3' miRNA: 3'- gCGGCgUCUCGaCgCGGCCG---------UUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 8875 | 0.66 | 0.327495 |
Target: 5'- gCGCCGgGacGGGuCUcCGCCGGCAGGaCCa -3' miRNA: 3'- -GCGGCgU--CUC-GAcGCGGCCGUUC-GGc -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 50509 | 0.66 | 0.335172 |
Target: 5'- aGuCCGUAGGGgUGUagaGCC-GCGGGCCGg -3' miRNA: 3'- gC-GGCGUCUCgACG---CGGcCGUUCGGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 34122 | 0.66 | 0.350917 |
Target: 5'- uGCCGC-GAGUUGUGCggCGGCAacgacucgguuGGaCCGa -3' miRNA: 3'- gCGGCGuCUCGACGCG--GCCGU-----------UC-GGC- -5' |
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18231 | 3' | -62.8 | NC_004680.1 | + | 48313 | 0.72 | 0.135996 |
Target: 5'- aCG-UGUAGAgGCUuccgucGCGCCGGCGAGCCa -3' miRNA: 3'- -GCgGCGUCU-CGA------CGCGGCCGUUCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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