miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18231 3' -62.8 NC_004680.1 + 36415 0.67 0.27742
Target:  5'- uGCCGCGGcGCagaccuacuuUGCGgucaagacCCGGCAAGCgGa -3'
miRNA:   3'- gCGGCGUCuCG----------ACGC--------GGCCGUUCGgC- -5'
18231 3' -62.8 NC_004680.1 + 39770 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 16683 0.7 0.195825
Target:  5'- gGCCGCAGGGCgguaucgGUGuuGGUGuGCCc -3'
miRNA:   3'- gCGGCGUCUCGa------CGCggCCGUuCGGc -5'
18231 3' -62.8 NC_004680.1 + 16942 0.69 0.227887
Target:  5'- aGUCGCGGGGCagGUGCCGGUGGugacucgaccGCUGa -3'
miRNA:   3'- gCGGCGUCUCGa-CGCGGCCGUU----------CGGC- -5'
18231 3' -62.8 NC_004680.1 + 3433 0.68 0.244919
Target:  5'- -uCCGCAGcaucucuGGCUaagGCgGCCGGCGAGUCGu -3'
miRNA:   3'- gcGGCGUC-------UCGA---CG-CGGCCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 3900 0.68 0.245525
Target:  5'- gCGUCGCAGcGGCacuccGUGCCGGuCAGcGCCGu -3'
miRNA:   3'- -GCGGCGUC-UCGa----CGCGGCC-GUU-CGGC- -5'
18231 3' -62.8 NC_004680.1 + 41315 0.68 0.251651
Target:  5'- uGCCGCu--GCUGaucgcCGCCGGCAucaucGGCCc -3'
miRNA:   3'- gCGGCGucuCGAC-----GCGGCCGU-----UCGGc -5'
18231 3' -62.8 NC_004680.1 + 1814 0.68 0.270786
Target:  5'- -uCCGUGGGGCUGggauucgacgauCGCCgcgugGGCGGGCCGg -3'
miRNA:   3'- gcGGCGUCUCGAC------------GCGG-----CCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 33570 0.67 0.27742
Target:  5'- cCGCCGUGGGGaacuccucggcCUGCGCUGGCccuacGUCGa -3'
miRNA:   3'- -GCGGCGUCUC-----------GACGCGGCCGuu---CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39686 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39590 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39806 0.71 0.172186
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 487 0.74 0.1013
Target:  5'- aGCgGCGGAagucggagGCUGCGCCGGUgugcccaccgGAGCCu -3'
miRNA:   3'- gCGgCGUCU--------CGACGCGGCCG----------UUCGGc -5'
18231 3' -62.8 NC_004680.1 + 47823 0.73 0.119042
Target:  5'- cCGUgaCGCGGAGUUggaGCGCCGGCuGGCUGc -3'
miRNA:   3'- -GCG--GCGUCUCGA---CGCGGCCGuUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 39722 0.72 0.135996
Target:  5'- gCGCCGCAGAGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 12329 0.72 0.135996
Target:  5'- cCGCCGCuucGGGUgccGCGCCGGgGAGUCc -3'
miRNA:   3'- -GCGGCGu--CUCGa--CGCGGCCgUUCGGc -5'
18231 3' -62.8 NC_004680.1 + 39866 0.71 0.147207
Target:  5'- gCGCCGCAGAGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 19376 0.71 0.159255
Target:  5'- gGUgCGCAGGGCUGgGCCuuggguaucaacGGuCAGGCCGg -3'
miRNA:   3'- gCG-GCGUCUCGACgCGG------------CC-GUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 9719 0.71 0.163465
Target:  5'- uCGCgGCGaauGgUGUGUCGGCGGGCCGg -3'
miRNA:   3'- -GCGgCGUcu-CgACGCGGCCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 39650 0.71 0.172186
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.