miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18231 3' -62.8 NC_004680.1 + 52185 1.08 0.000225
Target:  5'- uCGCCGCAGAGCUGCGCCGGCAAGCCGa -3'
miRNA:   3'- -GCGGCGUCUCGACGCGGCCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 487 0.74 0.1013
Target:  5'- aGCgGCGGAagucggagGCUGCGCCGGUgugcccaccgGAGCCu -3'
miRNA:   3'- gCGgCGUCU--------CGACGCGGCCG----------UUCGGc -5'
18231 3' -62.8 NC_004680.1 + 47823 0.73 0.119042
Target:  5'- cCGUgaCGCGGAGUUggaGCGCCGGCuGGCUGc -3'
miRNA:   3'- -GCG--GCGUCUCGA---CGCGGCCGuUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 48313 0.72 0.135996
Target:  5'- aCG-UGUAGAgGCUuccgucGCGCCGGCGAGCCa -3'
miRNA:   3'- -GCgGCGUCU-CGA------CGCGGCCGUUCGGc -5'
18231 3' -62.8 NC_004680.1 + 12329 0.72 0.135996
Target:  5'- cCGCCGCuucGGGUgccGCGCCGGgGAGUCc -3'
miRNA:   3'- -GCGGCGu--CUCGa--CGCGGCCgUUCGGc -5'
18231 3' -62.8 NC_004680.1 + 39722 0.72 0.135996
Target:  5'- gCGCCGCAGAGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 58419 0.72 0.143379
Target:  5'- uGCCGacugcguGGAGUagGCGCCGGCAggugAGCCa -3'
miRNA:   3'- gCGGCg------UCUCGa-CGCGGCCGU----UCGGc -5'
18231 3' -62.8 NC_004680.1 + 39866 0.71 0.147207
Target:  5'- gCGCCGCAGAGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 19376 0.71 0.159255
Target:  5'- gGUgCGCAGGGCUGgGCCuuggguaucaacGGuCAGGCCGg -3'
miRNA:   3'- gCG-GCGUCUCGACgCGG------------CC-GUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 9719 0.71 0.163465
Target:  5'- uCGCgGCGaauGgUGUGUCGGCGGGCCGg -3'
miRNA:   3'- -GCGgCGUcu-CgACGCGGCCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 39650 0.71 0.172186
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39806 0.71 0.172186
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAGggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUU-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39770 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39686 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 39590 0.7 0.186046
Target:  5'- gCGCCGCAGGGa-GCGCC-GCAuggagcGCCGc -3'
miRNA:   3'- -GCGGCGUCUCgaCGCGGcCGUu-----CGGC- -5'
18231 3' -62.8 NC_004680.1 + 16683 0.7 0.195825
Target:  5'- gGCCGCAGGGCgguaucgGUGuuGGUGuGCCc -3'
miRNA:   3'- gCGGCGUCUCGa------CGCggCCGUuCGGc -5'
18231 3' -62.8 NC_004680.1 + 28339 0.7 0.20088
Target:  5'- aCGgCGCGG-GCgGUGUCGGCGucggGGCCGa -3'
miRNA:   3'- -GCgGCGUCuCGaCGCGGCCGU----UCGGC- -5'
18231 3' -62.8 NC_004680.1 + 11188 0.7 0.20088
Target:  5'- gGCCGCGGcguucuGCUuggGCGCCGG--GGCCGc -3'
miRNA:   3'- gCGGCGUCu-----CGA---CGCGGCCguUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 42454 0.69 0.211333
Target:  5'- gGCCGCGGAaaUGCGCCGaGaucguGGCCu -3'
miRNA:   3'- gCGGCGUCUcgACGCGGC-Cgu---UCGGc -5'
18231 3' -62.8 NC_004680.1 + 27907 0.69 0.216733
Target:  5'- gGCCGCcGAGCUGCGgccaaccauCCaGCGcguAGCCGc -3'
miRNA:   3'- gCGGCGuCUCGACGC---------GGcCGU---UCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.