miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18232 5' -50 NC_004680.1 + 30804 0.7 0.759872
Target:  5'- cACCGGCGAccggauggacuUGGguGCGACGACGAucauCACa -3'
miRNA:   3'- cUGGUCGUU-----------ACU--CGCUGUUGCUu---GUG- -5'
18232 5' -50 NC_004680.1 + 32497 0.66 0.94126
Target:  5'- --aCGGCAAccUGcgcgcccgcAGCGACGACGGccGCACg -3'
miRNA:   3'- cugGUCGUU--AC---------UCGCUGUUGCU--UGUG- -5'
18232 5' -50 NC_004680.1 + 34549 0.69 0.811285
Target:  5'- -gUCAGCAucgccGAcuaccGCGGCGGCGAACACu -3'
miRNA:   3'- cuGGUCGUua---CU-----CGCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 34651 0.71 0.701531
Target:  5'- -cCCGGCGAcggcacccacaacaUGGGCGGCGcagACGGAUACg -3'
miRNA:   3'- cuGGUCGUU--------------ACUCGCUGU---UGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 34676 0.67 0.918075
Target:  5'- cGugCGGagaCGAUGccuaCGACGGCGAGCACa -3'
miRNA:   3'- -CugGUC---GUUACuc--GCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 36606 0.68 0.882399
Target:  5'- cGACgAGCuugcGAGCGGuguCGGCGAACAUc -3'
miRNA:   3'- -CUGgUCGuua-CUCGCU---GUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 36751 0.66 0.935914
Target:  5'- cAUCcGUggUGAGCG-CAGCG-ACACg -3'
miRNA:   3'- cUGGuCGuuACUCGCuGUUGCuUGUG- -5'
18232 5' -50 NC_004680.1 + 37443 0.67 0.904683
Target:  5'- uGACCAucauccgcaacGCGAUGAGgGAgAcGCGAugACg -3'
miRNA:   3'- -CUGGU-----------CGUUACUCgCUgU-UGCUugUG- -5'
18232 5' -50 NC_004680.1 + 38425 0.66 0.930268
Target:  5'- --gCGGCGA-GAGgGACAgaGCGAACAa -3'
miRNA:   3'- cugGUCGUUaCUCgCUGU--UGCUUGUg -5'
18232 5' -50 NC_004680.1 + 39591 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39663 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39688 0.68 0.866136
Target:  5'- -nCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cuGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39735 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39771 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39807 0.69 0.830503
Target:  5'- cGCC-GCAggGAGCGccGCAGgGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUUgCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39867 0.71 0.738222
Target:  5'- cGCC-GCAGaGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUUaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 40879 0.67 0.918075
Target:  5'- aAUCAGCAGUGGaccaccgcccGCGGCGugGAcuacuCACa -3'
miRNA:   3'- cUGGUCGUUACU----------CGCUGUugCUu----GUG- -5'
18232 5' -50 NC_004680.1 + 41418 0.72 0.69363
Target:  5'- ---aGGCAucaccgGAGuCGACAGCGAACGCg -3'
miRNA:   3'- cuggUCGUua----CUC-GCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 42073 0.67 0.897544
Target:  5'- aGACCuGCucgAAUGAGUGcCGcCGGGCGCa -3'
miRNA:   3'- -CUGGuCG---UUACUCGCuGUuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 42977 0.7 0.80036
Target:  5'- uGCCuuCAGUGGGCGcuggacaACAACGAACAg -3'
miRNA:   3'- cUGGucGUUACUCGC-------UGUUGCUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.